# List of top-scoring protein chains for T0237.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hn6A 110 4.06e-16 g.61.1.1 76721 1t3eA 421 2.34e+00 2ctx 71 2.53e+00 3ebx g.7.1.1 44420 1v8kA 410 5.33e+00 c.37.1.9 -7109 1pq2A 476 5.90e+00 a.104.1.1 -1470 1kvx 123 7.25e+00 1poa a.133.1.2 19597 5p2pA 119 8.37e+00 1poa a.133.1.2 19605 1e4uA 78 9.20e+00 1e4uA g.44.1.1 59231 2phiA 124 1.02e+01 1poa a.133.1.2 19602 1keaA 221 1.05e+01 a.96.1.2 68491 1l8sA 124 1.06e+01 a.133.1.2 77811 1jkw 323 1.06e+01 1jkw a.74.1.1 18356 a.74.1.1 18357 1kxu 333 1.07e+01 1jkw a.74.1.1 18358 a.74.1.1 18359 3p2pA 119 1.09e+01 1poa a.133.1.2 19607 1lmrA 35 1.11e+01 g.3.6.3 -12429 1hn4A 131 1.13e+01 a.133.1.2 65893 1dlc 584 1.26e+01 1ciy b.18.1.3 23719 b.77.2.1 27976 f.1.3.1 43391 1mku 123 1.31e+01 1poa a.133.1.2 19590 1danL 152 1.33e+01 1edmB g.3.11.1 44209 g.3.11.1 44210 g.32.1.1 44965 1o3wA 123 1.34e+01 a.133.1.2 86616 1c74A 123 1.34e+01 1poa a.133.1.2 19593 1oh1A 109 1.36e+01 unknown_sccs -4519 1bpq 123 1.43e+01 1poa a.133.1.2 19588 1gh4A 123 1.44e+01 1poa a.133.1.2 60516 1f9fA 83 1.48e+01 1f9fA d.58.8.1 39224 1ceh 123 1.54e+01 1poa a.133.1.2 19591 1kvw 123 1.55e+01 1poa a.133.1.2 19598 1irb 123 1.56e+01 1poa a.133.1.2 19586 1g4iA 123 1.56e+01 1poa a.133.1.2 60241 3bp2 123 1.56e+01 1poa a.133.1.2 19599 1kvy 123 1.59e+01 1poa a.133.1.2 19595 1og5A 475 1.62e+01 a.104.1.1 86982 4bp2 130 1.63e+01 1poa a.133.1.2 19584 2bp2 130 1.63e+01 1poa a.133.1.2 19600 1ploA 122 1.65e+01 g.7.1.3 -12533 1ne5A 42 1.65e+01 g.3.7.2 85588 1r9oA 477 1.68e+01 1ktzB 122 1.80e+01 g.7.1.3 68868 1nr6A 473 1.89e+01 a.104.1.1 -1464 1nsa 395 1.98e+01 1aye c.56.5.1 33825 d.58.3.1 39066 1v6fA 151 2.04e+01 1ewsA 32 2.04e+01 1ewsA g.9.1.1 59534 1ht3A 279 2.05e+01 1gci c.41.1.1 61243 1ic6A 279 2.07e+01 1gci c.41.1.1 62257 2prk 279 2.07e+01 1gci c.41.1.1 32548 1qk7A 32 2.22e+01 1qk7A g.3.6.2 44116 1imt 80 2.23e+01 1imt g.3.10.1 44201 g.3.10.1 44202 1vi1A 345 2.32e+01 unknown_sccs -8466 1m8tA 119 2.57e+01 a.133.1.2 -1959 1seiA 130 2.67e+01 1seiA d.140.1.1 41463 1fe5A 118 2.73e+01 1poa a.133.1.2 19563 1skoB 130 2.80e+01 1myn 44 2.95e+01 1gpt g.3.7.4 44172 1ur6B 52 3.10e+01 g.44.1.1 -12825 1m9zA 111 3.36e+01 g.7.1.3 78881 1bf9 41 3.43e+01 1edmB g.3.11.1 44223 1g0zA 118 3.46e+01 a.133.1.2 83263 1f7eA 46 3.64e+01 1edmB g.3.11.1 44221 1ji6A 589 3.74e+01 b.18.1.3 63066 b.77.2.1 63067 f.1.3.1 63068