# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hn6A 110 1.43e-23 g.61.1.1 76721 1brlA 355 8.33e-01 1lucA c.1.16.1 29553 1rypA 243 9.95e-01 1pmaA d.153.1.4 41932 1emn 82 4.54e+00 1emn g.3.11.1 44322 g.3.11.1 44323 1mrj 247 5.43e+00 1mrj d.165.1.1 42177 1myn 44 5.60e+00 1gpt g.3.7.4 44172 1odzA 386 6.04e+00 c.1.8.3 86889 1gw1A 376 6.42e+00 c.1.8.3 76361 1g0uG 252 7.82e+00 d.153.1.4 41952 1j9yA 385 8.15e+00 1j9yA c.1.8.3 62791 1lucA 355 9.26e+00 1lucA c.1.16.1 29547 1a3gA 308 9.46e+00 1daaA e.17.1.1 43286 1e4uA 78 1.07e+01 1e4uA g.44.1.1 59231 1c0nA 406 1.15e+01 1c0nA c.67.1.3 34433 1kqyA 273 1.18e+01 c.1.8.5 68843 1qk7A 32 1.19e+01 1qk7A g.3.6.2 44116 1u2fA 90 1.19e+01 1u2fA d.58.7.1 39168 1gvhA 396 1.21e+01 a.1.1.2 70601 b.43.4.2 70602 c.25.1.5 70603 1hvyA 288 1.23e+01 1bkpA d.117.1.1 41049 1nziA 159 1.31e+01 b.23.1.1 86449 g.3.11.1 86450 1r64A 481 1.47e+01 b.18.1.20 -3151 c.41.1.1 -7297 1cuoA 129 1.63e+01 1nwpA b.6.1.1 23015 1i1kA 309 1.77e+01 1daaA e.17.1.1 61533 1g24A 211 1.81e+01 1g24A d.166.1.1 42270 1esmA 316 1.82e+01 1esmA c.37.1.6 31953 1iyeA 309 1.83e+01 e.17.1.1 83786 1seiA 130 2.02e+01 1seiA d.140.1.1 41463 1ewsA 32 2.27e+01 1ewsA g.9.1.1 59534 1sva1 361 2.34e+01 1vpsA 1dcqA 278 2.40e+01 1dcqA d.211.1.1 19178 g.45.1.1 45326 1lmrA 35 2.48e+01 g.3.6.3 -12429 2hvm 273 2.58e+01 1cnv c.1.8.5 28985 1gl1I 36 2.63e+01 g.4.1.1 65275 1j8wB 273 2.63e+01 1avk 638 2.64e+01 1a2vA b.30.2.1 24410 d.17.2.1 38047 d.17.2.1 38048 1whe 86 2.74e+01 1edmB g.3.11.1 44242 g.32.1.1 44974 1jhb 106 2.78e+01 1kte c.47.1.1 32772 1ur6B 52 2.88e+01 g.44.1.1 -12825 1iakB 185 3.16e+01 1iakB b.1.1.2 21626 d.19.1.1 38200 1kqzA 273 3.19e+01 c.1.8.5 68844 1gnf 46 3.26e+01 1gatA g.39.1.1 45107 1pmc 36 3.29e+01 1pmc g.4.1.1 44382 1tsrA 219 3.31e+01 1tupA b.2.5.2 22437 1tupA 219 3.31e+01 1tupA b.2.5.2 22434 1lp4A 332 3.33e+01 d.144.1.7 74170 1om1A 332 3.48e+01 d.144.1.7 -11318 1oyiA 82 3.61e+01 a.4.5.19 -292 1ot5A 477 3.62e+01 b.18.1.20 87409 c.41.1.1 87410 1gl0I 35 3.78e+01 g.4.1.1 65271 1h65A 270 3.84e+01 c.37.1.8 65640 1ktzB 122 3.86e+01 g.7.1.3 68868 1l0oA 150 3.94e+01 d.122.1.3 73403 1m2rA 327 3.97e+01 d.144.1.7 84760 1tpg 91 3.99e+01 1tpg g.3.11.1 44325 g.27.1.1 44955