# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hn6A 110 1.03e-16 g.61.1.1 76721 1miuA 738 3.01e+00 a.170.1.1 79153 a.171.1.1 79154 b.40.4.3 79155 b.40.4.3 79156 b.40.4.3 79157 1q0vA 81 4.25e+00 j.105.1.1 -13401 1jhnA 424 4.39e+00 b.29.1.12 70060 b.104.1.1 66722 1ilk 151 7.97e+00 2ilk a.26.1.3 16886 2ilk 160 8.00e+00 2ilk a.26.1.3 16885 1r13A 148 8.46e+00 d.169.1.1 -11646 h.1.1.1 -12895 1ajyA 71 9.14e+00 1zmeC g.38.1.1 45083 h.1.3.1 45516 1e3oC 160 9.41e+00 1au7A a.4.1.1 59197 a.35.1.1 59198 1zmeC 70 1.03e+01 1zmeC g.38.1.1 45081 h.1.3.1 45514 1ni4A 365 1.04e+01 c.36.1.7 85728 1mslA 109 1.20e+01 1mslA f.16.1.1 43660 1qk7A 32 1.22e+01 1qk7A g.3.6.2 44116 1ml9A 302 1.24e+01 b.85.7.1 79282 1ov3A 138 1.36e+01 b.34.2.1 87451 b.34.2.1 87452 1hn4A 131 1.50e+01 a.133.1.2 65893 1zaq 44 1.64e+01 1zaq g.3.11.1 44314 1mku 123 1.71e+01 1poa a.133.1.2 19590 1cktA 71 1.79e+01 1cktA a.21.1.1 16417 1o9yA 84 1.81e+01 unknown_sccs -4105 1ur6B 52 1.89e+01 g.44.1.1 -12825 1g4iA 123 1.92e+01 1poa a.133.1.2 60241 1cewI 108 1.99e+01 1cewI d.17.1.2 37999 1gnf 46 1.99e+01 1gatA g.39.1.1 45107 1ueoA 63 2.05e+01 unknown_sccs -13343 1une 123 2.08e+01 1poa a.133.1.2 19583 1ic6A 279 2.11e+01 1gci c.41.1.1 62257 4bp2 130 2.22e+01 1poa a.133.1.2 19584 1l4aD 87 2.28e+01 h.1.15.1 73562 1cxxA 113 2.38e+01 1iml g.39.1.3 45139 g.39.1.3 45140 1k3xA 262 2.40e+01 a.156.1.2 77242 b.113.1.1 77243 g.39.1.8 77244 1tpg 91 2.44e+01 1tpg g.3.11.1 44325 g.27.1.1 44955 1octC 156 2.50e+01 1au7A a.4.1.1 15991 a.35.1.1 17017 1l5pA 93 2.50e+01 d.15.4.1 73598 1d3bB 91 2.63e+01 1d3bB b.38.1.1 24804 1a67 108 2.75e+01 1cewI d.17.1.2 38000 1e4uA 78 2.75e+01 1e4uA g.44.1.1 59231 1jjdA 55 2.83e+01 1jjdA g.46.1.1 63116 2prk 279 2.87e+01 1gci c.41.1.1 32548 1e0fI 57 2.91e+01 1e0fI g.3.15.2 44377 1pir 124 3.03e+01 1poa a.133.1.2 19611 1tmf4 31 3.24e+01 1tmf4 1p80A 753 3.24e+01 c.23.16.3 -6547 e.5.1.1 -11840 1r0tB 62 3.27e+01 unknown_sccs -12573 1qu1A 155 3.30e+01 1qu1A h.3.1.1 45670 1ihfB 94 3.31e+01 1huuA a.55.1.1 17894 1bqv 110 3.32e+01 1bqv a.60.1.1 17932 1njqA 39 3.36e+01 g.37.1.3 85822 1qli 113 3.47e+01 1iml g.39.1.3 45141 g.39.1.3 45142 1ggzA 148 3.72e+01 a.39.1.5 70176 1ha8A 51 3.78e+01 g.58.1.1 65747 1rz3A 201 3.79e+01 c.37.1.6 -7048 1kk6A 209 3.81e+01 b.81.1.3 68657 1hae 63 3.82e+01 1xdtR g.3.11.1 44298 1ffkW 73 3.91e+01 1ffkW g.41.8.1 45315 1cf9A 753 3.92e+01 1cf9A c.23.16.3 31441 e.5.1.1 42815