CreatePredAlphaCost pred_alpha2k alpha11 T0237.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0237.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 3 near_backbone 3 way_back 3 dry5 5 dry6.5 6 dry8 5 dry12 2 \
	phobic_fit 2 \
	sidechain 2 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 40  \
	pred_alpha2k 2 \
	pred_alpha04 6 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 4 \
	hbond_geom_beta_pair 10 \
	known_ssbond 5

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.


# T0237.t04.dssp-ehl2.constraints
StrandConstraint        L217    V219    6.044
HelixConstraint         L237    C240    6.192
HelixConstraint         E257    N273    6.13
HelixConstraint         R275    A281    6.435
StrandConstraint        C312    F315    7.058
StrandConstraint        I329    A330    6.249

# try1-opt2.sheets
SheetConstraint W218 V219 	C223 N222 	hbond V219
SheetConstraint W302 S307 	F315 K310 	hbond N304

# previously determined disulfide pairings
SSBond  C312    C240    1.0
SSBond  C321    C223    1.0