# List of top-scoring protein chains for t2k-100-30-near-backbone-11 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1abmA	198	4.65e-01	1avmA		
1ap6A	198	5.58e-01	1avmA	a.2.11.1	15746
				d.44.1.1	38705
1pl4A	198	5.94e-01		a.2.11.1	-132
				d.44.1.1	-9733
1n0nA	199	5.97e-01		a.2.11.1	79750
				d.44.1.1	79751
1vmoA	163	6.56e-01	1vmoA	b.77.1.1	27974
1tocR	120	2.25e+00	1tocR	g.8.1.2	44558
				g.8.1.2	44559
1d8bA	81	4.65e+00	1d8bA	a.60.8.1	18094
1qw9A	502	5.60e+00		b.71.1.2	-4677
				c.1.8.3	-5348
1g1eB	89	8.15e+00	1g1eB	a.59.1.1	17931
1keyA	235	8.97e+00		a.118.16.1	72389
1j1jA	240	9.50e+00		a.118.16.1	-1637
2ccyA	128	1.03e+01	2ccyA	a.24.3.2	16544
1ei7A	158	1.20e+01	1rmvA	a.24.5.1	16584
1ud0A	113	1.22e+01		unknown_sccs	-450
1fts	295	1.26e+01	1ng1	a.24.13.1	16968
				c.37.1.10	32279
1cvjA	190	1.71e+01	1cvjB	d.58.7.1	39191
				d.58.7.1	39192
1sxjE	354	1.94e+01			
1ut0A	190	2.00e+01			
1kkcA	221	2.06e+01		a.2.11.1	68660
				d.44.1.1	68661
1rj9A	304	2.35e+01		a.24.13.1	-631
				c.37.1.10	-7129
3crxA	343	2.48e+01	4crxA	a.60.9.1	18101
				d.163.1.1	42161
1ig8A	486	2.49e+01	2yhx	c.55.1.3	64746
				c.55.1.3	64747
1kagA	173	2.50e+01		c.37.1.2	72249
1dpsA	167	2.55e+01	1dpsA	a.25.1.1	16716
1dpsD	167	2.56e+01	1dpsA	a.25.1.1	16719
1otcB	260	2.69e+01	1otcB	b.40.4.3	25310
1kilE	49	2.72e+01		h.1.15.1	72522
1cvjB	190	2.78e+01	1cvjB	d.58.7.1	39193
				d.58.7.1	39194
1fl0A	171	2.79e+01	1eujA	b.40.4.4	25315
1fezA	256	2.81e+01	1fezA	c.108.1.3	43343
1jdc	429	2.85e+01	1jdc	b.71.1.1	27789
				c.1.8.1	28776
1dg3A	592	3.00e+01	1dg3A	a.114.1.1	19078
				c.37.1.8	32153
1rqlA	267	3.01e+01		c.108.1.3	-6814
1eujA	166	3.04e+01	1eujA	b.40.4.4	25316
1h10A	125	3.06e+01		b.55.1.1	83446
1aohA	147	3.36e+01	1aohA	b.2.2.2	22401
1kbuA	349	3.39e+01		a.60.9.1	72284
				d.163.1.1	72285
1g8lA	411	3.57e+01	1g8lA	b.85.6.1	60365
				b.103.1.1	60366
				c.57.1.2	60367
1kthA	58	3.58e+01		g.8.1.1	68863
1ha1	184	3.64e+01	1ha1	d.58.7.1	39147
				d.58.7.1	39148
1fxlA	167	3.64e+01	1b7fA	d.58.7.1	39183
				d.58.7.1	39184
1n81A	186	3.66e+01		a.185.1.1	85388
1mk0A	97	3.80e+01		d.226.1.1	79216
1nt2B	258	3.81e+01		a.183.1.1	86150
1iu9A	111	3.83e+01		c.78.2.1	-8500
1deeG	54	3.89e+01	1fc2C	a.8.1.1	16343
1va4A	279	3.94e+01			
1iznB	277	3.95e+01		e.43.1.2	83848