# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vmoA 163 1.17e+00 1vmoA b.77.1.1 27974 1j1jA 240 2.21e+00 a.118.16.1 -1637 1rrpB 134 2.60e+00 1rrpB b.55.1.3 26995 1fl0A 171 2.89e+00 1eujA b.40.4.4 25315 1eujA 166 3.82e+00 1eujA b.40.4.4 25316 1keyA 235 4.82e+00 a.118.16.1 72389 2ccyA 128 4.84e+00 2ccyA a.24.3.2 16544 1tocR 120 5.66e+00 1tocR g.8.1.2 44558 g.8.1.2 44559 1f8aB 167 6.38e+00 1pinA b.72.1.1 27803 d.26.1.1 38432 1h6qA 168 7.66e+00 1h6qA b.88.1.2 60692 1hpwA 129 9.99e+00 1hpwA d.24.1.1 61118 1g1eB 89 1.14e+01 1g1eB a.59.1.1 17931 2nllB 103 1.22e+01 2nllB g.39.1.2 45115 1fzvA 132 1.24e+01 1vpfA g.17.1.1 60159 1mhyB 395 1.30e+01 1mtyB a.25.1.2 16781 1a3p 45 1.30e+01 1egf g.3.11.1 44284 1i8nA 126 1.34e+01 1i8nA g.10.1.2 61976 1ivoC 53 1.45e+01 g.3.11.1 76853 2pac 82 1.48e+01 451c a.3.1.1 15907 1k5oA 86 1.72e+01 a.165.1.1 77269 1v84A 253 1.76e+01 1kmxA 55 1.78e+01 g.25.1.1 72758 1j2mA 99 1.97e+01 a.165.1.1 84018 1kxrA 339 1.97e+01 d.3.1.3 73175 451c 82 2.07e+01 451c a.3.1.1 15904 2ahjA 206 2.10e+01 2ahjA d.149.1.1 41772 1o9iA 266 2.19e+01 unknown_sccs -698 1hynP 379 2.25e+01 1hynP d.112.1.2 61408 1jkvA 266 2.32e+01 unknown_sccs 71719 1mtyB 384 2.34e+01 1mtyB a.25.1.2 16740 1rfzA 168 2.42e+01 unknown_sccs -1206 1mmoB 384 2.44e+01 1mtyB a.25.1.2 16768 3egf 53 2.48e+01 1egf g.3.11.1 44285 351c 82 2.68e+01 451c a.3.1.1 15905 2tmvP 158 2.69e+01 1rmvA a.24.5.1 16586 2ahjC 206 2.76e+01 2ahjA d.149.1.1 41773 2vgh 55 2.85e+01 2vgh g.25.1.1 44946 1d8bA 81 2.87e+01 1d8bA a.60.8.1 18094 1b4aA 149 2.99e+01 1b4aA a.4.5.3 16088 d.74.2.1 39721 1ei7A 158 2.99e+01 1rmvA a.24.5.1 16584 1va4A 279 3.15e+01 1qa4A 57 3.34e+01 1qa4A j.52.1.1 46334 1gnc 178 3.43e+01 1bgc a.26.1.1 16821 1ap6A 198 3.45e+01 1avmA a.2.11.1 15746 d.44.1.1 38705 1ei7B 158 3.72e+01 1rmvA a.24.5.1 16585 1egf 53 3.77e+01 1egf g.3.11.1 44290 1nt2B 258 3.91e+01 a.183.1.1 86150 1qa5A 58 3.92e+01 1qa5A j.52.1.1 46335 1i50I 122 3.93e+01 g.41.3.1 61762 g.41.3.1 61763