# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tocR 120 8.96e-02 1tocR g.8.1.2 44558 g.8.1.2 44559 1ap6A 198 1.69e-01 1avmA a.2.11.1 15746 d.44.1.1 38705 1n0nA 199 2.37e-01 a.2.11.1 79750 d.44.1.1 79751 1ne6A 283 2.74e-01 b.82.3.2 -4918 b.82.3.2 -4919 1pl4A 198 4.06e-01 a.2.11.1 -132 d.44.1.1 -9733 1grj 158 8.15e-01 1grj a.2.1.1 15691 d.26.1.2 38433 1gv3A 248 1.06e+00 a.2.11.1 70585 d.44.1.1 70586 1f5mA 180 1.10e+00 1f5mB d.110.2.1 40895 1h6qA 168 1.48e+00 1h6qA b.88.1.2 60692 1g72B 69 1.92e+00 4aahB a.137.2.1 19627 1iscA 192 1.98e+00 1avmA a.2.11.1 15733 d.44.1.1 38726 1ei7A 158 2.26e+00 1rmvA a.24.5.1 16584 1idsA 207 2.28e+00 1avmA a.2.11.1 15722 d.44.1.1 38730 1bbzA 58 3.10e+00 1bbzA b.34.2.1 24477 1aboA 62 3.23e+00 1bbzA b.34.2.1 24474 1txjA 171 3.98e+00 1kkcA 221 4.72e+00 a.2.11.1 68660 d.44.1.1 68661 1p7gA 222 5.08e+00 a.2.11.1 -108 d.44.1.1 -9742 1j57A 143 5.33e+00 d.221.1.1 77079 1gz6A 319 5.74e+00 c.2.1.2 76410 1h4vB 421 6.27e+00 1adjA c.51.1.1 60624 d.104.1.1 60625 1mngA 203 7.01e+00 1avmA a.2.11.1 15776 d.44.1.1 38701 1gcb 454 7.83e+00 3gcb d.3.1.1 37034 3gcb 470 8.24e+00 3gcb d.3.1.1 37032 1b06A 210 9.30e+00 1avmA a.2.11.1 15740 d.44.1.1 38737 1fr2B 134 1.05e+01 d.4.1.1 83257 1qqfA 277 1.13e+01 1c3d a.102.4.4 18875 1lmeA 176 1.26e+01 d.167.1.1 84629 1k04A 162 1.28e+01 a.24.14.1 67904 1qa4A 57 1.30e+01 1qa4A j.52.1.1 46334 1s0uA 408 1.33e+01 b.43.3.1 -4053 b.44.1.1 -4061 c.37.1.8 -7096 1qhlA 227 1.45e+01 1qhlA c.37.1.12 32382 1mswD 883 1.51e+01 e.8.1.3 79427 1k2xA 177 1.61e+01 d.153.1.5 -11450 1i0hA 205 1.72e+01 1avmA a.2.11.1 15760 d.44.1.1 38685 1ix9A 205 1.77e+01 a.2.11.1 76899 d.44.1.1 76900 1cliA 345 1.78e+01 1cliA d.79.4.1 39816 d.139.1.1 41459 1kveB 77 2.05e+01 1kveB 1emvB 134 2.07e+01 1bxiB d.4.1.1 37135 1dmmA 131 2.09e+01 1opy d.17.4.3 38114 1opy 131 2.10e+01 1opy d.17.4.3 38113 1qqp3 220 2.16e+01 1qqp3 1repC 251 2.17e+01 1repC a.4.5.10 16125 a.4.5.10 16126 1va4A 279 2.20e+01 1gxqA 106 2.20e+01 a.4.6.1 70721 1mspA 126 2.25e+01 1mspA b.1.11.2 22333 1ku1A 230 2.27e+01 a.118.3.1 72996 2ccyA 128 2.33e+01 2ccyA a.24.3.2 16544 1rqlA 267 2.34e+01 c.108.1.3 -6814 1avmA 201 2.34e+01 1avmA a.2.11.1 15782 d.44.1.1 38745 1qe3A 489 2.35e+01 2bce c.69.1.1 34630 1j1jA 240 2.38e+01 a.118.16.1 -1637 1m4uA 206 2.41e+01 g.17.1.7 78625 1b3uA 588 2.43e+01 1b3uA a.118.1.2 19135 1qnnA 191 2.46e+01 1avmA a.2.11.1 15792 d.44.1.1 38755 1r9cA 139 2.47e+01 d.32.1.2 -9557 1dwnA 127 2.48e+01 1dwnA d.85.1.1 40141 1g5tA 196 2.53e+01 1g5rA c.37.1.11 32366 1n9lA 109 2.56e+01 d.110.3.6 85468 1tfe 145 2.59e+01 1tfe d.43.1.1 38680 1in0A 163 2.62e+01 d.58.49.1 83694 d.58.49.1 83695 1kbhB 59 2.78e+01 a.153.1.1 68383 1oh0A 131 2.86e+01 d.17.4.3 87004 1vmoA 163 2.89e+01 1vmoA b.77.1.1 27974 1is1A 185 2.94e+01 d.67.3.1 83704 1gps 47 3.16e+01 1gpt g.3.7.5 44176 1hfoA 113 3.16e+01 d.80.1.3 61006 1zmeC 70 3.30e+01 1zmeC g.38.1.1 45081 h.1.3.1 45514 1s72P 149 3.38e+01 1i7dA 659 3.43e+01 1d6mA e.10.1.1 61886 1bsmA 201 3.43e+01 1avmA a.2.11.1 15780 d.44.1.1 38743 1oe8A 211 3.50e+01 a.45.1.1 86905 c.47.1.5 86906 1nt2B 258 3.57e+01 a.183.1.1 86150 1ab8A 220 3.68e+01 1azsA d.58.29.1 39414 1my6A 199 3.70e+01 a.2.11.1 85232 d.44.1.1 85233 1bbt3 220 3.76e+01 1qqp3 1aoy 78 3.80e+01 1aoy a.4.5.3 16087 1pufA 77 3.82e+01 a.4.1.1 -191 1fezA 256 3.96e+01 1fezA c.108.1.3 43343 1kn1B 161 3.99e+01 a.1.1.3 77456 1pnsC 206 4.00e+01 i.1.1.1 88170