# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vmoA 163 9.50e-01 1vmoA b.77.1.1 27974 1pl4A 198 9.87e-01 a.2.11.1 -132 d.44.1.1 -9733 1v33A 366 1.00e+00 unknown_sccs -11384 1ap6A 198 1.05e+00 1avmA a.2.11.1 15746 d.44.1.1 38705 1n0nA 199 1.16e+00 a.2.11.1 79750 d.44.1.1 79751 1pwxA 254 1.85e+00 c.2.1.2 -5858 1tocR 120 2.16e+00 1tocR g.8.1.2 44558 g.8.1.2 44559 1ohtA 215 2.39e+00 d.118.1.1 87036 1p7gA 222 2.98e+00 a.2.11.1 -108 d.44.1.1 -9742 1ne6A 283 4.07e+00 b.82.3.2 -4918 b.82.3.2 -4919 1g71A 347 5.14e+00 1g71A unknown_sccs 43268 1dkuA 317 6.70e+00 1dkuA c.61.1.2 34118 c.61.1.2 34119 1rypD 241 7.74e+00 1rypD d.153.1.4 41935 1f60A 458 8.31e+00 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1qe3A 489 8.87e+00 2bce c.69.1.1 34630 1ycsB 239 8.97e+00 1ycsB b.34.2.1 24553 d.211.1.1 19155 1vcbA 118 9.22e+00 1vcbA d.15.1.1 37603 1fr2B 134 9.26e+00 d.4.1.1 83257 1q87A 221 1.11e+01 unknown_sccs -12028 1qw9A 502 1.18e+01 b.71.1.2 -4677 c.1.8.3 -5348 1psdA 409 1.22e+01 1psdA c.2.1.4 30097 c.23.12.1 31357 d.58.18.1 39354 1aboA 62 1.23e+01 1bbzA b.34.2.1 24474 1jv2A 957 1.27e+01 b.1.15.1 67334 b.1.15.1 67335 b.1.15.1 67336 b.69.8.1 67337 1bbzA 58 1.33e+01 1bbzA b.34.2.1 24477 1josA 128 1.54e+01 d.52.7.1 84191 1nm8A 616 1.72e+01 c.43.1.3 85872 c.43.1.3 85873 1mspA 126 1.72e+01 1mspA b.1.11.2 22333 1dceA 567 1.78e+01 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1n7hA 381 1.94e+01 c.2.1.2 80250 1ixkA 315 1.94e+01 unknown_sccs -8099 1qz8A 113 1.97e+01 unknown_sccs -4264 1n8fA 350 2.02e+01 c.1.10.4 85397 1idsA 207 2.02e+01 1avmA a.2.11.1 15722 d.44.1.1 38730 1o5uA 101 2.32e+01 b.82.1.8 -4845 1igqA 62 2.40e+01 b.34.1.3 66130 1s3iA 310 2.42e+01 b.46.1.1 -4111 c.65.1.1 -8042 1grj 158 2.43e+01 1grj a.2.1.1 15691 d.26.1.2 38433 1pinA 163 2.45e+01 1pinA b.72.1.1 27802 d.26.1.1 38431 1b8aA 438 2.48e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1okiA 210 2.58e+01 b.11.1.1 -3030 b.11.1.1 -3031 1j0hA 588 2.62e+01 b.1.18.2 77027 b.71.1.1 77028 c.1.8.1 77029 1kkcA 221 2.73e+01 a.2.11.1 68660 d.44.1.1 68661 1bkjA 240 3.08e+01 1bkjA d.90.1.1 40243 153l 185 3.14e+01 153l d.2.1.5 36984 1p0iA 529 3.22e+01 c.69.1.1 -8291 1hk9A 74 3.42e+01 b.38.1.2 83541 1aohA 147 3.61e+01 1aohA b.2.2.2 22401 1b06A 210 3.63e+01 1avmA a.2.11.1 15740 d.44.1.1 38737 1bt3A 345 3.68e+01 1bt3A a.86.1.2 18507 1i1iP 681 3.74e+01 1i1iP d.92.1.5 40297 1snzA 344 3.82e+01 b.30.5.4 -3496 1gg1A 350 3.97e+01 1qr7A c.1.10.4 29187 1jztA 246 3.98e+01 c.104.1.1 63319