# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1ap6A	198	7.52e-01	1avmA	a.2.11.1	15746
				d.44.1.1	38705
1n0nA	199	7.91e-01		a.2.11.1	79750
				d.44.1.1	79751
1pl4A	198	8.12e-01		a.2.11.1	-132
				d.44.1.1	-9733
1vmoA	163	1.00e+00	1vmoA	b.77.1.1	27974
1tocR	120	3.69e+00	1tocR	g.8.1.2	44558
				g.8.1.2	44559
1ne6A	283	4.78e+00		b.82.3.2	-4918
				b.82.3.2	-4919
2ccyA	128	5.86e+00	2ccyA	a.24.3.2	16544
1qw9A	502	8.35e+00		b.71.1.2	-4677
				c.1.8.3	-5348
1ut0A	190	8.36e+00			
1sxjE	354	9.27e+00			
1idsA	207	1.07e+01	1avmA	a.2.11.1	15722
				d.44.1.1	38730
1g8lA	411	2.26e+01	1g8lA	b.85.6.1	60365
				b.103.1.1	60366
				c.57.1.2	60367
1iscA	192	2.42e+01	1avmA	a.2.11.1	15733
				d.44.1.1	38726
1fr2B	134	2.60e+01		d.4.1.1	83257
1kkcA	221	2.86e+01		a.2.11.1	68660
				d.44.1.1	68661
1va4A	279	3.02e+01			
1pqzA	238	3.06e+01			
1deeG	54	3.14e+01	1fc2C	a.8.1.1	16343
1d8bA	81	3.17e+01	1d8bA	a.60.8.1	18094
1emvB	134	3.28e+01	1bxiB	d.4.1.1	37135
1ud0A	113	3.37e+01		unknown_sccs	-450
1aohA	147	3.50e+01	1aohA	b.2.2.2	22401
2if1	126	3.60e+01	2if1	d.64.1.1	39547
1ha1	184	3.67e+01	1ha1	d.58.7.1	39147
				d.58.7.1	39148
1kthA	58	3.87e+01		g.8.1.1	68863
1n81A	186	3.92e+01		a.185.1.1	85388
1f8rA	498	3.93e+01	1f8rA	c.3.1.2	30410
				d.16.1.5	37974
1jb7B	260	3.99e+01	1otcB	b.40.4.3	62839