# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1vmoA	163	3.21e-01	1vmoA	b.77.1.1	27974
1tocR	120	4.76e-01	1tocR	g.8.1.2	44558
				g.8.1.2	44559
1pl4A	198	5.45e-01		a.2.11.1	-132
				d.44.1.1	-9733
1ap6A	198	5.90e-01	1avmA	a.2.11.1	15746
				d.44.1.1	38705
1n0nA	199	7.03e-01		a.2.11.1	79750
				d.44.1.1	79751
1ne6A	283	7.24e-01		b.82.3.2	-4918
				b.82.3.2	-4919
1q87A	221	1.30e+00		unknown_sccs	-12028
1v33A	366	3.29e+00		unknown_sccs	-11384
1josA	128	4.10e+00		d.52.7.1	84191
1qe3A	489	8.46e+00	2bce	c.69.1.1	34630
1g71A	347	9.47e+00	1g71A	unknown_sccs	43268
1cf9A	753	1.12e+01	1cf9A	c.23.16.3	31441
				e.5.1.1	42815
1ud0A	113	1.25e+01		unknown_sccs	-450
2ccyA	128	1.25e+01	2ccyA	a.24.3.2	16544
1a7j	290	1.28e+01	1a7j	c.37.1.6	31952
1j0hA	588	1.30e+01		b.1.18.2	77027
				b.71.1.1	77028
				c.1.8.1	77029
1p80A	753	1.51e+01		c.23.16.3	-6547
				e.5.1.1	-11840
1jb7B	260	1.52e+01	1otcB	b.40.4.3	62839
1mk0A	97	1.64e+01		d.226.1.1	79216
1qz8A	113	1.71e+01		unknown_sccs	-4264
1sczA	233	1.87e+01		c.43.1.1	-7326
1o5uA	101	1.90e+01		b.82.1.8	-4845
1pwxA	254	1.94e+01		c.2.1.2	-5858
1aohA	147	1.96e+01	1aohA	b.2.2.2	22401
1ohtA	215	1.96e+01		d.118.1.1	87036
1dceA	567	1.99e+01	1dceA	a.118.6.1	19191
				b.7.4.1	23218
				c.10.2.2	30867
1jwiB	125	2.04e+01		d.169.1.1	67384
1mspA	126	2.12e+01	1mspA	b.1.11.2	22333
1i1iP	681	2.24e+01	1i1iP	d.92.1.5	40297
1d8bA	81	2.34e+01	1d8bA	a.60.8.1	18094
1igqA	62	2.53e+01		b.34.1.3	66130
1idsA	207	2.59e+01	1avmA	a.2.11.1	15722
				d.44.1.1	38730
1f60A	458	2.63e+01	1efcA	b.43.3.1	25705
				b.44.1.1	25745
				c.37.1.8	32140
1vcbA	118	2.67e+01	1vcbA	d.15.1.1	37603
1grj	158	2.69e+01	1grj	a.2.1.1	15691
				d.26.1.2	38433
1ocxA	182	2.79e+01		b.81.1.3	86814
1s3iA	310	2.81e+01		b.46.1.1	-4111
				c.65.1.1	-8042
1rypD	241	2.90e+01	1rypD	d.153.1.4	41935
1az6	36	2.91e+01	2cbh	g.3.8.1	44184
1kkcA	221	3.00e+01		a.2.11.1	68660
				d.44.1.1	68661
1lm8B	118	3.11e+01		d.15.1.1	74033
1nlnA	204	3.43e+01		d.3.1.7	-8897
1rypC	244	3.63e+01	1rypC	d.153.1.4	41934
1g72B	69	3.67e+01	4aahB	a.137.2.1	19627
1vf6C	72	3.73e+01		unknown_sccs	-1180
1avpA	204	3.77e+01	1avpA	d.3.1.7	37132
1senA	164	3.90e+01			
1dkuA	317	3.93e+01	1dkuA	c.61.1.2	34118
				c.61.1.2	34119