# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ap6A 198 2.40e-01 1avmA a.2.11.1 15746 d.44.1.1 38705 1pl4A 198 2.56e-01 a.2.11.1 -132 d.44.1.1 -9733 1n0nA 199 2.89e-01 a.2.11.1 79750 d.44.1.1 79751 1tocR 120 3.37e-01 1tocR g.8.1.2 44558 g.8.1.2 44559 1vmoA 163 3.40e-01 1vmoA b.77.1.1 27974 1ne6A 283 4.34e-01 b.82.3.2 -4918 b.82.3.2 -4919 1v33A 366 5.82e-01 unknown_sccs -11384 1qe3A 489 1.34e+00 2bce c.69.1.1 34630 1nm8A 616 1.46e+00 c.43.1.3 85872 c.43.1.3 85873 1g71A 347 2.40e+00 1g71A unknown_sccs 43268 1mspA 126 3.54e+00 1mspA b.1.11.2 22333 1jb7B 260 6.09e+00 1otcB b.40.4.3 62839 1otgA 125 6.35e+00 1otgA d.80.1.2 39831 1psdA 409 6.85e+00 1psdA c.2.1.4 30097 c.23.12.1 31357 d.58.18.1 39354 1p7gA 222 7.17e+00 a.2.11.1 -108 d.44.1.1 -9742 1grj 158 7.49e+00 1grj a.2.1.1 15691 d.26.1.2 38433 2aaa 484 7.82e+00 7taa b.71.1.1 27777 c.1.8.1 28764 1igqA 62 9.86e+00 b.34.1.3 66130 1kf6D 119 9.94e+00 f.21.2.2 72400 1uf2C 421 1.00e+01 unknown_sccs -1522 b.19.1.1 -3155 1j0hA 588 1.03e+01 b.1.18.2 77027 b.71.1.1 77028 c.1.8.1 77029 1pwxA 254 1.07e+01 c.2.1.2 -5858 1nb8A 353 1.09e+01 d.3.1.9 80385 1rypD 241 1.15e+01 1rypD d.153.1.4 41935 1dceA 567 1.23e+01 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1qo3C 137 1.23e+01 1qo3C d.169.1.1 42350 1qz8A 113 1.28e+01 unknown_sccs -4264 1idsA 207 1.29e+01 1avmA a.2.11.1 15722 d.44.1.1 38730 1d8bA 81 1.31e+01 1d8bA a.60.8.1 18094 1ocxA 182 1.39e+01 b.81.1.3 86814 1q87A 221 1.49e+01 unknown_sccs -12028 2ccyA 128 1.61e+01 2ccyA a.24.3.2 16544 2trxA 108 1.74e+01 1thx c.47.1.1 32719 1eu1A 780 1.76e+01 1dmr b.52.2.2 26903 c.81.1.1 35311 1bkjA 240 1.78e+01 1bkjA d.90.1.1 40243 1r2zA 274 1.81e+01 a.156.1.2 -370 b.113.1.1 -5094 g.39.1.8 -12748 1mai 131 1.93e+01 1mai b.55.1.1 26951 1hk9A 74 2.00e+01 b.38.1.2 83541 1qw9A 502 2.01e+01 b.71.1.2 -4677 c.1.8.3 -5348 1senA 164 2.13e+01 1ee8A 266 2.15e+01 1ee8A a.156.1.2 75823 b.113.1.1 75824 g.39.1.8 75825 1rypC 244 2.18e+01 1rypC d.153.1.4 41934 1lfaA 187 2.19e+01 1ido c.62.1.1 34122 1ig8A 486 2.25e+01 2yhx c.55.1.3 64746 c.55.1.3 64747 1bt3A 345 2.37e+01 1bt3A a.86.1.2 18507 1p0iA 529 2.37e+01 c.69.1.1 -8291 1kkcA 221 2.37e+01 a.2.11.1 68660 d.44.1.1 68661 1snzA 344 2.41e+01 b.30.5.4 -3496 1g72B 69 2.46e+01 4aahB a.137.2.1 19627 1o5uA 101 2.56e+01 b.82.1.8 -4845 1nxcA 478 2.64e+01 a.102.2.1 -1333 1vcbA 118 2.66e+01 1vcbA d.15.1.1 37603 1mjnA 179 2.78e+01 c.62.1.1 79210 1th8A 145 2.82e+01 1f6bA 198 2.91e+01 c.37.1.8 64986 1lm8B 118 2.93e+01 d.15.1.1 74033 1fr2B 134 3.02e+01 d.4.1.1 83257 1jyhA 157 3.06e+01 d.60.1.3 71956 1josA 128 3.10e+01 d.52.7.1 84191 1s3iA 310 3.10e+01 b.46.1.1 -4111 c.65.1.1 -8042 1gxqA 106 3.12e+01 a.4.6.1 70721 1m48A 133 3.21e+01 a.26.1.2 74443 1nbfA 353 3.63e+01 d.3.1.9 80387 1mk0A 97 3.63e+01 d.226.1.1 79216 1qr0A 228 3.77e+01 1qr0A d.150.1.1 59038 d.150.1.1 59039 1aohA 147 3.78e+01 1aohA b.2.2.2 22401 1pinA 163 3.78e+01 1pinA b.72.1.1 27802 d.26.1.1 38431 1a7j 290 3.80e+01 1a7j c.37.1.6 31952