# List of top-scoring protein chains for t04-100-30-bys hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1pl4A 198 3.26e-01 a.2.11.1 -132 d.44.1.1 -9733 1n0nA 199 3.75e-01 a.2.11.1 79750 d.44.1.1 79751 1ap6A 198 3.87e-01 1avmA a.2.11.1 15746 d.44.1.1 38705 1vmoA 163 9.24e-01 1vmoA b.77.1.1 27974 1ohtA 215 1.43e+00 d.118.1.1 87036 1psdA 409 1.50e+00 1psdA c.2.1.4 30097 c.23.12.1 31357 d.58.18.1 39354 1v33A 366 1.88e+00 unknown_sccs -11384 1tocR 120 2.43e+00 1tocR g.8.1.2 44558 g.8.1.2 44559 1idsA 207 3.38e+00 1avmA a.2.11.1 15722 d.44.1.1 38730 1mk0A 97 4.65e+00 d.226.1.1 79216 1jwiB 125 5.83e+00 d.169.1.1 67384 1ut0A 190 7.60e+00 1nb8A 353 8.03e+00 d.3.1.9 80385 1qw9A 502 8.70e+00 b.71.1.2 -4677 c.1.8.3 -5348 1h09A 338 9.24e+00 b.109.1.1 83420 c.1.8.8 83421 2ccyA 128 9.53e+00 2ccyA a.24.3.2 16544 1sxjE 354 9.64e+00 1g71A 347 1.02e+01 1g71A unknown_sccs 43268 1nbfA 353 1.04e+01 d.3.1.9 80387 1jb7B 260 1.08e+01 1otcB b.40.4.3 62839 1dik 874 1.09e+01 1dik c.1.12.2 29304 c.8.1.1 30702 d.142.1.5 41572 1ud0A 113 1.11e+01 unknown_sccs -450 1sczA 233 1.25e+01 c.43.1.1 -7326 1mjnA 179 1.26e+01 c.62.1.1 79210 1qe3A 489 1.28e+01 2bce c.69.1.1 34630 1viuA 203 1.28e+01 d.113.1.1 -10889 1vf6C 72 1.33e+01 unknown_sccs -1180 1kf6D 119 1.35e+01 f.21.2.2 72400 1lfaA 187 1.39e+01 1ido c.62.1.1 34122 1kblA 873 1.50e+01 c.1.12.2 68384 c.8.1.1 68385 d.142.1.5 68386 1k9jA 139 1.55e+01 d.169.1.1 68353 1qz8A 113 1.58e+01 unknown_sccs -4264 1g72B 69 1.64e+01 4aahB a.137.2.1 19627 1gotB 340 1.67e+01 1tbgA b.69.4.1 27648 1q87A 221 1.73e+01 unknown_sccs -12028 1josA 128 1.75e+01 d.52.7.1 84191 1sl4A 155 1.77e+01 1igqA 62 1.94e+01 b.34.1.3 66130 1tn3 137 2.22e+01 1htn d.169.1.1 42423 1ly2A 130 2.27e+01 g.18.1.1 74335 g.18.1.1 74336 1shsA 147 2.29e+01 1shsA b.15.1.1 23675 1g7sA 594 2.42e+01 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1ne6A 283 2.47e+01 b.82.3.2 -4918 b.82.3.2 -4919 1ghqB 134 2.63e+01 1ghqB g.18.1.1 60522 g.18.1.1 60523 1qo3C 137 2.75e+01 1qo3C d.169.1.1 42350 2hgf 97 2.93e+01 1bhtA g.10.1.1 44607 1e5rA 290 3.04e+01 1e5rA b.82.2.4 59276 1m48A 133 3.10e+01 a.26.1.2 74443 1td5A 202 3.24e+01 1icxA 155 3.25e+01 d.129.3.1 71191 1g72A 573 3.27e+01 4aahA b.70.1.1 27680 1kkcA 221 3.57e+01 a.2.11.1 68660 d.44.1.1 68661 1ovlA 271 3.63e+01 a.123.1.1 87455 1rypC 244 3.67e+01 1rypC d.153.1.4 41934 1t7sA 137 3.91e+01 1lugA 259 3.93e+01 b.74.1.1 -4726 1fl2A 310 3.94e+01 1hyuA c.3.1.5 59869 c.3.1.5 59870