CreatePredAlphaCost pred_alpha2k alpha11 T0237.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0237.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 3 near_backbone 3 way_back 3 dry5 5 dry6.5 6 dry8 5 dry12 2 \
	phobic_fit 2 \
	sidechain 1 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 40  \
	pred_alpha2k 3 \
	pred_alpha04 3 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 4 \
	hbond_geom_beta_pair 10 \
	known_ssbond 5

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

# T0237.t2k.dssp-ehl2.constraints

HelixConstraint         P12     K19     6.358
StrandConstraint        V30     D33     6.987
StrandConstraint        Y45     R46     6.425
StrandConstraint        G58     I61     7.643
HelixConstraint         L98     K106    7.481
HelixConstraint         V109    M112    6.146
HelixConstraint         I117    A124    6.436
StrandConstraint        A141    Y143    7.349
StrandConstraint        T149    Y154    6.942
StrandConstraint        V191    L193    6.88
HelixConstraint         W201    D202    6.036
StrandConstraint        L217    W218    6.367

# try1-opt2.sheets
SheetConstraint I59 V60   	T25 H26	   	hbond V60	14	
SheetConstraint A85 F86   	E62 N63	   	hbond A85	14
SheetConstraint H139 A141 	L153 H151	hbond H139	14


# known disulfide bonds taken from main structure

SSBond  C150    C120    2.0
SSBond  C178    C166    2.0
SSBond  C205    C52     2.0