# List of top-scoring protein chains for t2k-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m6bA 621 2.43e-01 c.10.2.5 74521 c.10.2.5 74522 g.3.9.1 74523 g.3.9.1 74524 1g5aA 628 3.72e-01 b.71.1.1 65152 c.1.8.1 65153 1kaeA 434 5.59e-01 c.82.1.2 72247 1f5qB 252 6.98e-01 1f5qB a.74.1.1 18362 a.74.1.1 18363 1h9oA 112 9.91e-01 1qadA d.93.1.1 60837 1ee9A 320 1.29e+00 1ee9A c.2.1.7 30288 c.58.1.2 33936 1k75A 434 1.56e+00 c.82.1.2 68253 1edzA 320 1.97e+00 1ee9A c.2.1.7 30287 c.58.1.2 33935 1ivhA 394 2.11e+00 3mdeA a.29.3.1 16608 e.6.1.1 42869 1o0iA 138 2.30e+00 d.38.1.5 86532 1iso 416 2.84e+00 1iso c.77.1.1 35065 1evyA 366 2.86e+00 1evyA a.100.1.6 18811 c.2.1.6 30215 1pb1A 416 4.14e+00 c.77.1.1 88014 1ul7A 102 4.76e+00 unknown_sccs -11020 1l8dA 112 5.26e+00 h.4.12.1 73687 7icd 416 5.33e+00 1iso c.77.1.1 35072 1oghA 204 5.36e+00 b.85.4.1 86994 1go3F 107 6.28e+00 a.60.8.2 65407 1bfi 112 7.77e+00 1qadA d.93.1.1 40499 19hcA 292 8.28e+00 19hcA a.138.1.1 19668 1meyC 87 8.87e+00 2gliA k.12.1.1 46430 1ofwA 296 8.99e+00 a.138.1.1 -2035 1dfaA 454 9.20e+00 1vdeA b.86.1.2 28375 d.95.2.2 40575 d.95.2.2 40576 1qcxA 359 9.27e+00 1qcxA b.80.1.2 28028 1kgsA 225 9.35e+00 a.4.6.1 68596 c.23.1.1 68597 1uocA 289 9.60e+00 unknown_sccs -7671 1j7nA 776 9.90e+00 d.92.1.14 66409 d.92.1.14 66410 d.166.1.1 66411 1shwA 138 1.02e+01 1ixlA 131 1.05e+01 d.38.1.5 -9705 1xsm 390 1.06e+01 1xsm a.25.1.2 16804 1v5sA 126 1.06e+01 1hw5A 210 1.21e+01 2cgpA a.4.5.4 16098 b.82.3.2 28137 1idk 359 1.26e+01 1qcxA b.80.1.2 28025 1cvrA 435 1.28e+01 1cvrA b.1.18.12 21949 c.17.1.2 31006 1qadA 111 1.38e+01 1qadA d.93.1.1 40498 1pkhA 204 1.40e+01 b.85.4.1 -5053 1mhnA 59 1.48e+01 b.34.9.1 84964 1gmnA 183 1.53e+01 g.10.1.1 65315 g.14.1.1 65316 1g5vA 88 1.55e+01 1g5vA b.34.9.1 60292 1gx5A 536 1.57e+01 e.8.1.4 70682 1fkd 107 1.60e+01 1fkj d.26.1.1 38383 1jltB 122 1.62e+01 a.133.1.2 66868 1fkj 107 1.67e+01 1fkj d.26.1.1 38384 1ed1A 135 1.69e+01 1hiwA a.61.1.1 18130 1qf5A 431 1.83e+01 1adeA c.37.1.10 32212 1fkf 107 1.91e+01 1fkj d.26.1.1 38386 1uouA 474 1.91e+01 a.46.2.1 -951 c.27.1.1 -6642 d.41.3.1 -9715 1bhtA 176 1.94e+01 1bhtA g.10.1.1 44603 g.14.1.1 44663 1f39A 101 1.99e+01 1umuA b.87.1.1 28386 1h0oA 390 2.02e+01 a.25.1.2 70845 1e88A 160 2.11e+01 g.14.1.2 44669 g.14.1.2 44670 g.27.1.1 44950 1adeA 431 2.22e+01 1adeA c.37.1.10 32213 1bkf 107 2.25e+01 1fkj d.26.1.1 38382 2hgf 97 2.32e+01 1bhtA g.10.1.1 44607 1a8h 500 2.34e+01 1a8h a.27.1.1 16922 c.26.1.1 31589 2mnr 357 2.34e+01 2mnr c.1.11.2 29245 d.54.1.1 38889 2mysB 166 2.44e+01 1wdcB a.39.1.5 17308 1tie 172 2.44e+01 1wba b.42.4.1 25592 1e8bA 160 2.45e+01 1e8bA g.14.1.2 44671 g.14.1.2 44672 g.27.1.1 44951 1quvA 578 2.46e+01 1quvA e.8.1.4 43119 8ohm 435 2.48e+01 1heiA c.37.1.14 32469 c.37.1.14 32470 2scpA 174 2.52e+01 2scpA a.39.1.5 17256 1csjA 531 2.54e+01 1quvA e.8.1.4 43120 1lkxA 697 2.69e+01 c.37.1.9 73981 1qmpA 130 2.72e+01 1dz3A c.23.1.1 31106 1ld8A 382 2.80e+01 a.118.6.1 73838 1mdl 359 2.83e+01 2mnr c.1.11.2 29247 d.54.1.1 38891 1onwA 390 2.85e+01 b.92.1.7 87172 c.1.9.13 87173 1lv3A 68 2.86e+01 g.39.1.9 78231 1hq8A 123 2.96e+01 1b6e d.169.1.1 61127 1e6iA 121 2.97e+01 1b91A a.29.2.1 16969 1oz7A 131 3.01e+01 d.169.1.1 -11622 1prgA 270 3.02e+01 2prgA a.123.1.1 19314 1jcqA 382 3.21e+01 a.118.6.1 66504 1kp0A 402 3.31e+01 c.55.2.1 72834 d.127.1.1 72835 1c2pA 576 3.36e+01 1quvA e.8.1.4 43117 1ihp 438 3.39e+01 1ihp c.60.1.2 33993 2cgpA 210 3.47e+01 2cgpA a.4.5.4 16102 b.82.3.2 28141 1lvhA 221 3.55e+01 c.108.1.6 74282 1dljA 402 3.63e+01 1dliA a.100.1.4 18808 c.2.1.6 30212 c.26.3.1 31621 1bmv2 374 3.67e+01 1bmv2 1pqhA 143 3.75e+01 b.52.2.1 -4318 1pcp 106 3.90e+01 2pspA g.16.1.1 44742 g.16.1.1 44743 1n8nA 212 3.92e+01 unknown_sccs -6830 2pspA 106 3.99e+01 2pspA g.16.1.1 44730 g.16.1.1 44731