# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1h9oA 112 1.03e+00 1qadA d.93.1.1 60837 1hw5A 210 3.21e+00 2cgpA a.4.5.4 16098 b.82.3.2 28137 1m6bA 621 3.24e+00 c.10.2.5 74521 c.10.2.5 74522 g.3.9.1 74523 g.3.9.1 74524 1kliL 69 5.04e+00 g.3.11.1 77436 1jbuL 63 5.20e+00 1hcgB g.3.11.1 62857 1us7B 265 5.31e+00 unknown_sccs -1518 1g5aA 628 5.42e+00 b.71.1.1 65152 c.1.8.1 65153 1ub4A 110 9.89e+00 b.34.6.2 88399 1bfi 112 9.89e+00 1qadA d.93.1.1 40499 1fleI 57 9.97e+00 1fleI g.3.14.1 44352 1fkd 107 1.02e+01 1fkj d.26.1.1 38383 1cvwL 55 1.05e+01 1hcgB g.3.11.1 44211 1h7nA 342 1.23e+01 1b4kA c.1.10.3 60726 1ul7A 102 1.36e+01 unknown_sccs -11020 2cgpA 210 1.41e+01 2cgpA a.4.5.4 16102 b.82.3.2 28141 1ohlA 342 1.45e+01 c.1.10.3 87035 1fkj 107 1.45e+01 1fkj d.26.1.1 38384 1jv2B 692 1.51e+01 b.1.15.1 67338 c.62.1.1 67339 d.200.1.1 67340 g.3.11.6 67341 g.3.11.6 67342 1ylvA 342 1.52e+01 1b4kA c.1.10.3 29180 1qadA 111 1.53e+01 1qadA d.93.1.1 40498 1iso 416 1.68e+01 1iso c.77.1.1 35065 1fkf 107 1.79e+01 1fkj d.26.1.1 38386 1vdeA 454 1.95e+01 1vdeA b.86.1.2 28378 d.95.2.2 40581 d.95.2.2 40582 1ivhA 394 1.95e+01 3mdeA a.29.3.1 16608 e.6.1.1 42869 1qlaB 239 2.02e+01 1qlaB a.1.2.1 15679 d.15.4.2 37707 1dfaA 454 2.17e+01 1vdeA b.86.1.2 28375 d.95.2.2 40575 d.95.2.2 40576 1v5sA 126 2.23e+01 2rel 57 2.25e+01 1fleI g.3.14.1 44353 1afwA 393 2.26e+01 1afwA c.95.1.1 35900 c.95.1.1 35901 1j34A 129 2.28e+01 d.169.1.1 84048 1oz7A 131 2.35e+01 d.169.1.1 -11622 1poc 134 2.38e+01 1poc a.133.1.1 19513 1bkf 107 2.52e+01 1fkj d.26.1.1 38382 1l8dA 112 2.56e+01 h.4.12.1 73687 1jltB 122 2.69e+01 a.133.1.2 66868 1aw5 326 2.73e+01 1b4kA c.1.10.3 29181 1oghA 204 2.74e+01 b.85.4.1 86994 1dxrM 323 2.76e+01 6prcM f.26.1.1 43432 6prcM 323 2.77e+01 6prcM f.26.1.1 43435 2pspA 106 2.79e+01 2pspA g.16.1.1 44730 g.16.1.1 44731 7icd 416 2.83e+01 1iso c.77.1.1 35072 2rgf 97 2.89e+01 1lfdA d.15.1.5 37627 1pv9A 348 2.90e+01 c.55.2.1 -7610 d.127.1.1 -11000 2chsA 127 2.93e+01 2chsA d.79.1.2 39764 1pbiA 72 3.04e+01 1pi2 g.3.13.1 44346 1e88A 160 3.13e+01 g.14.1.2 44669 g.14.1.2 44670 g.27.1.1 44950 1mc2A 122 3.28e+01 a.133.1.2 74622 1b9rA 105 3.59e+01 1ayfA d.15.4.1 37683 1pb1A 416 3.61e+01 c.77.1.1 88014 1n9eA 787 3.62e+01 b.30.2.1 -3529 d.17.2.1 -9278 d.17.2.1 -9279 1qbqA 333 3.79e+01 1ft1A a.118.6.1 19187 1bkcA 255 3.83e+01 1bkcA d.92.1.10 40331 1s9aA 257 3.86e+01 1aokB 122 3.93e+01 1poa a.133.1.2 19561