Best Alignments for T0236

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1r5qA/T0236-1r5qA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1r5qA/T0236-1r5qA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.6152e-021.5285e-03 unknown_sccs
1v2zA/T0236-1v2zA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1v2zA/T0236-1v2zA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 3.1128e-018.5213e-02
1q6aA/T0236-1q6aA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1q6aA/T0236-1q6aA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 3.9722e-011.5039e-01 unknown_sccs
1jfiB/T0236-1jfiB-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1jfiB/T0236-1jfiB-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 4.3465e+007.3901e-01 1jfiB a.22.1.3
1moh/T0236-1moh-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1moh/T0236-1moh-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 5.8345e+005.4056e-01 1flp a.1.1.2
1b0b/T0236-1b0b-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1b0b/T0236-1b0b-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 6.0756e+001.0555e+00 2fal a.1.1.2
1mxsA/T0236-1mxsA-t2k-global-adpstyle5.a2m 1mxsA/T0236-1mxsA-t2k-global-adpstyle5.al 6.1858e+003.4525e+00 c.1.10.1
1f5xA/T0236-1f5xA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1f5xA/T0236-1f5xA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 8.0165e+004.2176e+00 1f5xA a.87.1.1
1sxjE/T0236-1sxjE-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1sxjE/T0236-1sxjE-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 8.6242e+001.0457e+00

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001