# TARGET T0236 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0236.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 7 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.009 0.003 0.005 0.262 0.102 0.618 2 D 0.013 0.009 0.011 0.573 0.070 0.324 3 F 0.007 0.003 0.013 0.824 0.042 0.110 4 R 0.005 0.001 0.012 0.869 0.040 0.072 5 E 0.004 0.001 0.015 0.832 0.068 0.080 6 V 0.003 0.002 0.019 0.850 0.077 0.049 7 I 0.003 0.002 0.016 0.838 0.081 0.060 8 E 0.003 0.001 0.013 0.799 0.094 0.090 9 Q 0.002 0.001 0.009 0.829 0.077 0.082 10 R 0.002 0.003 0.006 0.809 0.047 0.132 11 Y 0.001 0.001 0.003 0.968 0.008 0.019 12 H 0.001 0.001 0.002 0.989 0.004 0.005 13 Q 0.001 0.001 0.002 0.992 0.003 0.003 14 L 0.001 0.001 0.001 0.995 0.001 0.002 15 L 0.001 0.001 0.001 0.994 0.002 0.003 16 S 0.001 0.001 0.002 0.992 0.003 0.003 17 R 0.001 0.001 0.003 0.989 0.005 0.004 18 Y 0.001 0.001 0.005 0.980 0.009 0.006 19 I 0.001 0.001 0.015 0.929 0.031 0.024 20 A 0.002 0.001 0.022 0.862 0.069 0.043 21 E 0.006 0.002 0.027 0.649 0.163 0.153 22 L 0.013 0.007 0.016 0.291 0.284 0.390 23 T 0.017 0.011 0.016 0.245 0.270 0.440 24 E 0.004 0.001 0.028 0.833 0.083 0.050 25 T 0.005 0.001 0.029 0.887 0.053 0.024 26 S 0.011 0.002 0.023 0.895 0.038 0.031 27 L 0.010 0.001 0.010 0.941 0.017 0.021 28 Y 0.017 0.002 0.010 0.931 0.021 0.020 29 Q 0.020 0.002 0.017 0.904 0.028 0.029 30 A 0.026 0.002 0.028 0.868 0.034 0.041 31 Q 0.024 0.002 0.046 0.814 0.055 0.058 32 K 0.020 0.003 0.068 0.753 0.070 0.086 33 F 0.021 0.009 0.026 0.691 0.080 0.174 34 S 0.019 0.005 0.008 0.636 0.071 0.261 35 R 0.001 0.001 0.005 0.967 0.013 0.014 36 K 0.002 0.001 0.005 0.971 0.015 0.007 37 T 0.001 0.001 0.008 0.970 0.016 0.004 38 I 0.002 0.001 0.017 0.949 0.022 0.009 39 E 0.001 0.001 0.041 0.913 0.036 0.008 40 H 0.001 0.001 0.041 0.878 0.053 0.027 41 Q 0.004 0.001 0.020 0.463 0.169 0.343 42 I 0.006 0.034 0.006 0.115 0.141 0.699 43 P 0.004 0.008 0.003 0.092 0.112 0.782 44 P 0.001 0.001 0.012 0.975 0.008 0.005 45 E 0.001 0.001 0.007 0.983 0.008 0.001 46 E 0.001 0.001 0.007 0.983 0.008 0.002 47 I 0.001 0.001 0.002 0.990 0.004 0.004 48 I 0.001 0.001 0.001 0.994 0.003 0.002 49 S 0.001 0.001 0.002 0.992 0.004 0.002 50 I 0.001 0.001 0.002 0.992 0.002 0.004 51 H 0.001 0.001 0.002 0.991 0.002 0.005 52 R 0.001 0.001 0.003 0.987 0.003 0.007 53 K 0.001 0.001 0.006 0.990 0.003 0.002 54 V 0.001 0.001 0.006 0.988 0.005 0.001 55 L 0.001 0.001 0.010 0.978 0.009 0.003 56 K 0.001 0.001 0.011 0.950 0.027 0.012 57 E 0.001 0.001 0.012 0.870 0.069 0.048 58 L 0.002 0.010 0.013 0.547 0.156 0.272 59 Y 0.003 0.006 0.034 0.114 0.469 0.373 60 P 0.004 0.003 0.122 0.215 0.492 0.164 61 S 0.005 0.004 0.118 0.209 0.493 0.170 62 L 0.007 0.008 0.080 0.287 0.392 0.227 63 P 0.007 0.003 0.108 0.544 0.178 0.162 64 E 0.005 0.003 0.119 0.638 0.150 0.084 65 D 0.008 0.003 0.098 0.770 0.074 0.047 66 V 0.010 0.002 0.020 0.935 0.016 0.017 67 F 0.011 0.001 0.010 0.957 0.010 0.012 68 H 0.008 0.002 0.006 0.969 0.005 0.010 69 S 0.005 0.001 0.003 0.966 0.005 0.019 70 L 0.001 0.001 0.001 0.996 0.001 0.002 71 D 0.001 0.001 0.001 0.998 0.001 0.001 72 F 0.001 0.001 0.001 0.999 0.001 0.001 73 L 0.001 0.001 0.001 0.999 0.001 0.001 74 I 0.001 0.001 0.001 0.999 0.001 0.001 75 E 0.001 0.001 0.001 0.999 0.001 0.001 76 V 0.001 0.001 0.001 0.998 0.001 0.001 77 M 0.001 0.001 0.001 0.996 0.002 0.001 78 I 0.001 0.001 0.001 0.991 0.004 0.003 79 G 0.001 0.001 0.006 0.985 0.006 0.004 80 Y 0.001 0.001 0.007 0.974 0.009 0.009 81 G 0.002 0.001 0.017 0.827 0.055 0.098 82 M 0.008 0.004 0.035 0.739 0.095 0.119 83 A 0.017 0.005 0.044 0.711 0.094 0.128 84 Y 0.031 0.003 0.057 0.792 0.069 0.047 85 Q 0.055 0.005 0.046 0.750 0.079 0.065 86 E 0.039 0.003 0.037 0.797 0.059 0.065 87 H 0.030 0.003 0.029 0.836 0.050 0.052 88 Q 0.025 0.003 0.036 0.824 0.055 0.057 89 T 0.021 0.003 0.037 0.812 0.065 0.063 90 L 0.014 0.002 0.022 0.856 0.048 0.059 91 R 0.015 0.003 0.020 0.842 0.063 0.057 92 G 0.011 0.002 0.017 0.801 0.080 0.089 93 I 0.007 0.002 0.020 0.873 0.051 0.048 94 Q 0.007 0.002 0.022 0.863 0.055 0.051 95 Q 0.007 0.002 0.020 0.840 0.070 0.061 96 E 0.004 0.002 0.012 0.883 0.037 0.062 97 I 0.005 0.002 0.010 0.822 0.042 0.119 98 K 0.004 0.001 0.009 0.868 0.025 0.093 99 S 0.005 0.002 0.007 0.902 0.013 0.071 100 E 0.003 0.001 0.004 0.982 0.003 0.007 101 I 0.001 0.001 0.002 0.994 0.001 0.002 102 E 0.001 0.001 0.002 0.992 0.003 0.002 103 I 0.001 0.001 0.002 0.985 0.006 0.005 104 A 0.001 0.001 0.004 0.975 0.012 0.008 105 A 0.001 0.001 0.013 0.937 0.033 0.014 106 N 0.003 0.001 0.030 0.818 0.092 0.056 107 V 0.006 0.005 0.045 0.687 0.127 0.130 108 Q 0.008 0.009 0.041 0.373 0.188 0.381 109 Q 0.008 0.009 0.019 0.219 0.164 0.581 110 T 0.001 0.002 0.001 0.023 0.036 0.937