# TARGET T0236 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str2-from-empty.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0236.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 7 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.003 0.838 0.001 0.004 0.095 0.001 0.001 0.002 0.043 0.007 0.005 0.004 2 D 0.001 0.027 0.593 0.001 0.007 0.324 0.001 0.001 0.003 0.019 0.016 0.001 0.009 3 F 0.001 0.003 0.078 0.001 0.012 0.845 0.001 0.001 0.001 0.032 0.026 0.001 0.001 4 R 0.001 0.001 0.043 0.001 0.009 0.918 0.001 0.001 0.001 0.010 0.019 0.001 0.001 5 E 0.001 0.001 0.019 0.001 0.015 0.949 0.001 0.001 0.001 0.004 0.011 0.001 0.001 6 V 0.001 0.001 0.012 0.001 0.008 0.952 0.001 0.001 0.001 0.007 0.018 0.001 0.001 7 I 0.001 0.001 0.018 0.001 0.007 0.928 0.001 0.001 0.001 0.007 0.037 0.001 0.001 8 E 0.001 0.001 0.020 0.001 0.004 0.931 0.001 0.001 0.001 0.016 0.026 0.001 0.001 9 Q 0.001 0.001 0.009 0.001 0.004 0.957 0.001 0.001 0.001 0.007 0.021 0.001 0.001 10 R 0.001 0.001 0.009 0.001 0.003 0.959 0.001 0.001 0.001 0.006 0.021 0.001 0.001 11 Y 0.001 0.001 0.005 0.001 0.002 0.980 0.001 0.001 0.001 0.002 0.011 0.001 0.001 12 H 0.001 0.001 0.003 0.001 0.001 0.990 0.001 0.001 0.001 0.003 0.003 0.001 0.001 13 Q 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.005 0.001 0.001 14 L 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.005 0.001 0.001 15 L 0.001 0.001 0.003 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.006 0.001 0.001 16 S 0.001 0.001 0.003 0.001 0.003 0.981 0.001 0.001 0.001 0.002 0.012 0.001 0.001 17 R 0.001 0.001 0.002 0.001 0.004 0.960 0.001 0.001 0.001 0.003 0.030 0.001 0.001 18 Y 0.001 0.001 0.008 0.001 0.007 0.916 0.001 0.001 0.001 0.007 0.061 0.001 0.001 19 I 0.001 0.005 0.072 0.001 0.027 0.703 0.001 0.001 0.001 0.037 0.151 0.001 0.002 20 A 0.001 0.003 0.086 0.001 0.032 0.565 0.001 0.001 0.001 0.069 0.240 0.002 0.002 21 E 0.001 0.004 0.158 0.001 0.022 0.397 0.001 0.001 0.001 0.132 0.278 0.002 0.005 22 L 0.001 0.010 0.273 0.001 0.012 0.262 0.001 0.001 0.001 0.222 0.214 0.002 0.004 23 T 0.001 0.009 0.484 0.001 0.007 0.225 0.001 0.001 0.002 0.203 0.059 0.002 0.009 24 E 0.001 0.001 0.024 0.001 0.019 0.917 0.001 0.001 0.001 0.017 0.018 0.001 0.002 25 T 0.001 0.001 0.021 0.001 0.031 0.916 0.001 0.001 0.001 0.010 0.017 0.001 0.001 26 S 0.001 0.001 0.013 0.001 0.022 0.937 0.001 0.001 0.002 0.005 0.015 0.001 0.002 27 L 0.001 0.001 0.012 0.001 0.017 0.941 0.001 0.001 0.002 0.006 0.017 0.001 0.002 28 Y 0.001 0.001 0.014 0.001 0.014 0.921 0.001 0.001 0.001 0.009 0.035 0.003 0.001 29 Q 0.001 0.001 0.027 0.001 0.013 0.899 0.001 0.001 0.001 0.013 0.041 0.001 0.002 30 A 0.001 0.002 0.031 0.001 0.011 0.899 0.001 0.001 0.001 0.023 0.027 0.001 0.004 31 Q 0.001 0.002 0.019 0.001 0.019 0.919 0.001 0.001 0.001 0.012 0.022 0.002 0.002 32 K 0.001 0.001 0.015 0.001 0.027 0.893 0.001 0.001 0.001 0.011 0.049 0.001 0.001 33 F 0.001 0.002 0.034 0.001 0.018 0.852 0.001 0.001 0.002 0.027 0.062 0.001 0.002 34 S 0.001 0.003 0.063 0.001 0.004 0.888 0.001 0.001 0.002 0.022 0.015 0.001 0.003 35 R 0.001 0.001 0.003 0.001 0.004 0.980 0.001 0.001 0.001 0.002 0.011 0.001 0.001 36 K 0.001 0.001 0.002 0.001 0.006 0.979 0.001 0.001 0.001 0.002 0.010 0.001 0.001 37 T 0.001 0.001 0.003 0.001 0.015 0.966 0.001 0.001 0.001 0.003 0.012 0.001 0.001 38 I 0.001 0.001 0.008 0.001 0.015 0.946 0.001 0.001 0.001 0.003 0.027 0.001 0.001 39 E 0.001 0.002 0.011 0.001 0.035 0.859 0.001 0.001 0.001 0.014 0.077 0.001 0.001 40 H 0.001 0.001 0.036 0.001 0.028 0.548 0.001 0.001 0.001 0.082 0.302 0.001 0.001 41 Q 0.001 0.004 0.180 0.001 0.018 0.181 0.001 0.001 0.002 0.105 0.505 0.001 0.003 42 I 0.001 0.032 0.758 0.001 0.001 0.038 0.001 0.001 0.004 0.148 0.013 0.002 0.004 43 P 0.001 0.007 0.950 0.001 0.001 0.015 0.001 0.001 0.001 0.023 0.001 0.001 0.002 44 P 0.001 0.001 0.007 0.001 0.010 0.958 0.001 0.001 0.001 0.008 0.018 0.001 0.001 45 E 0.001 0.001 0.003 0.001 0.017 0.962 0.001 0.001 0.001 0.003 0.016 0.001 0.001 46 E 0.001 0.001 0.003 0.001 0.011 0.977 0.001 0.001 0.001 0.002 0.005 0.001 0.001 47 I 0.001 0.001 0.006 0.001 0.003 0.983 0.001 0.001 0.001 0.001 0.006 0.001 0.001 48 I 0.001 0.001 0.002 0.001 0.002 0.990 0.001 0.001 0.001 0.002 0.003 0.001 0.001 49 S 0.001 0.001 0.001 0.001 0.002 0.987 0.001 0.001 0.001 0.001 0.008 0.001 0.001 50 I 0.001 0.001 0.001 0.001 0.001 0.978 0.001 0.001 0.001 0.002 0.017 0.001 0.001 51 H 0.001 0.001 0.007 0.001 0.001 0.981 0.001 0.001 0.001 0.004 0.007 0.001 0.001 52 R 0.001 0.001 0.001 0.001 0.002 0.992 0.001 0.001 0.001 0.001 0.004 0.001 0.001 53 K 0.001 0.001 0.001 0.001 0.002 0.993 0.001 0.001 0.001 0.001 0.005 0.001 0.001 54 V 0.001 0.001 0.001 0.001 0.003 0.988 0.001 0.001 0.001 0.001 0.008 0.001 0.001 55 L 0.001 0.001 0.002 0.001 0.004 0.975 0.001 0.001 0.001 0.001 0.018 0.001 0.001 56 K 0.001 0.001 0.005 0.001 0.007 0.938 0.001 0.001 0.001 0.004 0.046 0.001 0.001 57 E 0.001 0.001 0.019 0.001 0.014 0.759 0.001 0.001 0.001 0.014 0.192 0.001 0.001 58 L 0.001 0.005 0.109 0.001 0.023 0.554 0.001 0.001 0.001 0.083 0.225 0.001 0.001 59 Y 0.001 0.005 0.487 0.001 0.057 0.199 0.001 0.001 0.001 0.143 0.107 0.001 0.001 60 P 0.001 0.001 0.107 0.001 0.160 0.289 0.001 0.001 0.001 0.101 0.341 0.001 0.001 61 S 0.001 0.006 0.132 0.001 0.119 0.281 0.001 0.001 0.001 0.127 0.334 0.001 0.001 62 L 0.001 0.006 0.405 0.001 0.038 0.251 0.001 0.001 0.001 0.256 0.042 0.001 0.001 63 P 0.001 0.001 0.119 0.001 0.070 0.691 0.001 0.001 0.001 0.020 0.097 0.001 0.001 64 E 0.001 0.001 0.024 0.001 0.046 0.851 0.001 0.001 0.001 0.026 0.051 0.001 0.001 65 D 0.001 0.001 0.020 0.001 0.041 0.894 0.001 0.001 0.001 0.012 0.029 0.001 0.001 66 V 0.001 0.001 0.009 0.001 0.009 0.966 0.001 0.001 0.001 0.004 0.008 0.001 0.001 67 F 0.001 0.001 0.006 0.001 0.006 0.976 0.001 0.001 0.001 0.002 0.007 0.001 0.001 68 H 0.001 0.001 0.006 0.001 0.005 0.970 0.001 0.001 0.001 0.003 0.014 0.001 0.001 69 S 0.001 0.001 0.002 0.001 0.001 0.984 0.001 0.001 0.001 0.002 0.008 0.001 0.001 70 L 0.001 0.001 0.002 0.001 0.002 0.991 0.001 0.001 0.001 0.002 0.002 0.001 0.001 71 D 0.001 0.001 0.003 0.001 0.005 0.984 0.001 0.001 0.001 0.002 0.005 0.001 0.001 72 F 0.001 0.001 0.001 0.001 0.004 0.984 0.001 0.001 0.001 0.001 0.008 0.001 0.001 73 L 0.001 0.001 0.001 0.001 0.002 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 74 I 0.001 0.001 0.001 0.001 0.003 0.986 0.001 0.001 0.001 0.001 0.009 0.001 0.001 75 E 0.001 0.001 0.001 0.001 0.003 0.979 0.001 0.001 0.001 0.001 0.015 0.001 0.001 76 V 0.001 0.001 0.002 0.001 0.002 0.982 0.001 0.001 0.001 0.003 0.010 0.001 0.001 77 M 0.001 0.001 0.001 0.001 0.003 0.987 0.001 0.001 0.001 0.001 0.007 0.001 0.001 78 I 0.001 0.001 0.001 0.001 0.003 0.986 0.001 0.001 0.001 0.001 0.007 0.001 0.001 79 G 0.001 0.001 0.002 0.001 0.005 0.969 0.001 0.001 0.001 0.002 0.019 0.001 0.001 80 Y 0.001 0.001 0.003 0.001 0.005 0.963 0.001 0.001 0.001 0.004 0.021 0.001 0.001 81 G 0.001 0.001 0.006 0.001 0.006 0.949 0.001 0.001 0.001 0.003 0.032 0.001 0.001 82 M 0.002 0.001 0.011 0.001 0.010 0.920 0.001 0.001 0.001 0.008 0.043 0.001 0.002 83 A 0.003 0.003 0.018 0.001 0.011 0.885 0.001 0.001 0.002 0.012 0.061 0.001 0.003 84 Y 0.003 0.001 0.013 0.001 0.011 0.919 0.001 0.001 0.001 0.009 0.037 0.001 0.002 85 Q 0.003 0.001 0.030 0.001 0.016 0.896 0.001 0.001 0.002 0.015 0.032 0.003 0.002 86 E 0.002 0.004 0.019 0.001 0.018 0.897 0.001 0.001 0.003 0.015 0.032 0.001 0.008 87 H 0.002 0.002 0.016 0.001 0.024 0.904 0.001 0.001 0.001 0.008 0.037 0.001 0.003 88 Q 0.002 0.001 0.017 0.001 0.029 0.860 0.001 0.001 0.001 0.016 0.067 0.003 0.002 89 T 0.002 0.002 0.028 0.001 0.017 0.837 0.001 0.001 0.001 0.014 0.091 0.002 0.006 90 L 0.001 0.003 0.035 0.001 0.015 0.854 0.001 0.001 0.001 0.029 0.052 0.002 0.008 91 R 0.001 0.002 0.033 0.001 0.008 0.869 0.001 0.001 0.001 0.024 0.056 0.004 0.002 92 G 0.001 0.002 0.051 0.001 0.011 0.837 0.001 0.001 0.001 0.024 0.068 0.001 0.005 93 I 0.001 0.002 0.061 0.001 0.016 0.846 0.001 0.001 0.001 0.023 0.047 0.001 0.003 94 Q 0.001 0.002 0.034 0.001 0.024 0.890 0.001 0.001 0.001 0.013 0.033 0.001 0.002 95 Q 0.001 0.002 0.034 0.001 0.022 0.885 0.001 0.001 0.001 0.018 0.034 0.002 0.002 96 E 0.001 0.001 0.021 0.001 0.009 0.924 0.001 0.001 0.001 0.010 0.033 0.001 0.001 97 I 0.001 0.001 0.023 0.001 0.002 0.932 0.001 0.001 0.001 0.023 0.017 0.001 0.001 98 K 0.001 0.001 0.007 0.001 0.002 0.979 0.001 0.001 0.001 0.003 0.007 0.001 0.001 99 S 0.001 0.001 0.006 0.001 0.002 0.979 0.001 0.001 0.001 0.006 0.006 0.001 0.001 100 E 0.001 0.001 0.001 0.001 0.002 0.991 0.001 0.001 0.001 0.001 0.004 0.001 0.001 101 I 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 102 E 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 103 I 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.007 0.001 0.001 104 A 0.001 0.001 0.002 0.001 0.003 0.983 0.001 0.001 0.001 0.002 0.009 0.001 0.001 105 A 0.001 0.001 0.002 0.001 0.011 0.948 0.001 0.001 0.001 0.003 0.035 0.001 0.001 106 N 0.001 0.001 0.006 0.001 0.018 0.870 0.001 0.001 0.001 0.006 0.100 0.001 0.001 107 V 0.001 0.003 0.040 0.001 0.027 0.754 0.001 0.001 0.001 0.051 0.120 0.001 0.002 108 Q 0.001 0.013 0.131 0.001 0.026 0.471 0.001 0.001 0.001 0.081 0.262 0.008 0.007 109 Q 0.001 0.016 0.465 0.001 0.011 0.216 0.001 0.001 0.003 0.042 0.227 0.004 0.015 110 T 0.001 0.001 0.984 0.001 0.001 0.007 0.001 0.001 0.001 0.004 0.002 0.001 0.001