# TARGET T0236 # Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0236.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 7 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.001 0.001 0.002 0.001 0.001 0.997 2 D 0.024 0.040 0.004 0.209 0.003 0.030 0.691 3 F 0.005 0.004 0.019 0.661 0.066 0.055 0.190 4 R 0.004 0.002 0.015 0.824 0.031 0.030 0.094 5 E 0.003 0.001 0.012 0.880 0.029 0.029 0.047 6 V 0.003 0.001 0.011 0.913 0.013 0.037 0.022 7 I 0.002 0.001 0.010 0.904 0.011 0.045 0.027 8 E 0.001 0.001 0.005 0.943 0.010 0.029 0.012 9 Q 0.001 0.001 0.004 0.949 0.010 0.025 0.010 10 R 0.001 0.001 0.005 0.956 0.005 0.024 0.009 11 Y 0.001 0.001 0.004 0.966 0.003 0.016 0.009 12 H 0.001 0.001 0.003 0.982 0.002 0.010 0.002 13 Q 0.001 0.001 0.002 0.983 0.002 0.011 0.001 14 L 0.001 0.001 0.001 0.985 0.002 0.009 0.002 15 L 0.001 0.001 0.001 0.983 0.003 0.009 0.003 16 S 0.001 0.001 0.005 0.973 0.003 0.014 0.004 17 R 0.002 0.001 0.006 0.963 0.005 0.020 0.004 18 Y 0.001 0.001 0.011 0.943 0.004 0.034 0.006 19 I 0.003 0.004 0.015 0.858 0.017 0.085 0.019 20 A 0.004 0.002 0.019 0.745 0.021 0.176 0.032 21 E 0.006 0.002 0.016 0.523 0.082 0.247 0.124 22 L 0.008 0.005 0.014 0.383 0.178 0.183 0.228 23 T 0.019 0.010 0.013 0.172 0.204 0.103 0.479 24 E 0.018 0.005 0.064 0.653 0.069 0.094 0.096 25 T 0.050 0.004 0.074 0.696 0.027 0.083 0.066 26 S 0.043 0.003 0.085 0.748 0.023 0.060 0.038 27 L 0.132 0.005 0.026 0.731 0.025 0.038 0.044 28 Y 0.194 0.008 0.022 0.660 0.024 0.039 0.053 29 Q 0.169 0.008 0.028 0.637 0.034 0.068 0.056 30 A 0.050 0.003 0.049 0.752 0.022 0.055 0.069 31 Q 0.037 0.002 0.073 0.758 0.030 0.055 0.045 32 K 0.034 0.006 0.061 0.721 0.037 0.088 0.053 33 F 0.016 0.008 0.022 0.694 0.086 0.053 0.121 34 S 0.016 0.004 0.011 0.671 0.060 0.045 0.193 35 R 0.003 0.001 0.011 0.912 0.020 0.029 0.024 36 K 0.003 0.001 0.012 0.928 0.016 0.023 0.018 37 T 0.004 0.002 0.020 0.905 0.016 0.028 0.025 38 I 0.005 0.005 0.017 0.858 0.014 0.056 0.045 39 E 0.006 0.004 0.025 0.628 0.027 0.276 0.034 40 H 0.002 0.001 0.011 0.146 0.066 0.747 0.027 41 Q 0.004 0.004 0.007 0.017 0.271 0.272 0.425 42 I 0.007 0.039 0.002 0.005 0.346 0.007 0.596 43 P 0.005 0.010 0.001 0.002 0.049 0.002 0.932 44 P 0.001 0.001 0.096 0.745 0.044 0.071 0.044 45 E 0.001 0.001 0.073 0.884 0.006 0.034 0.003 46 E 0.001 0.001 0.113 0.853 0.004 0.025 0.004 47 I 0.001 0.001 0.035 0.943 0.002 0.015 0.004 48 I 0.001 0.001 0.007 0.961 0.005 0.016 0.008 49 S 0.001 0.001 0.007 0.972 0.003 0.015 0.002 50 I 0.001 0.001 0.004 0.978 0.004 0.010 0.003 51 H 0.001 0.001 0.003 0.985 0.001 0.008 0.003 52 R 0.001 0.001 0.003 0.990 0.001 0.006 0.001 53 K 0.001 0.001 0.002 0.986 0.001 0.011 0.001 54 V 0.001 0.001 0.003 0.981 0.001 0.014 0.001 55 L 0.001 0.001 0.007 0.969 0.002 0.017 0.004 56 K 0.001 0.001 0.019 0.924 0.003 0.050 0.003 57 E 0.001 0.001 0.031 0.838 0.006 0.119 0.005 58 L 0.001 0.004 0.040 0.676 0.108 0.107 0.064 59 Y 0.003 0.009 0.092 0.289 0.099 0.180 0.328 60 P 0.001 0.001 0.145 0.301 0.048 0.474 0.030 61 S 0.001 0.001 0.105 0.211 0.034 0.614 0.033 62 L 0.001 0.005 0.064 0.304 0.177 0.069 0.379 63 P 0.002 0.004 0.060 0.604 0.047 0.135 0.149 64 E 0.002 0.001 0.082 0.672 0.029 0.179 0.035 65 D 0.002 0.002 0.071 0.750 0.018 0.129 0.027 66 V 0.003 0.002 0.021 0.904 0.011 0.040 0.018 67 F 0.003 0.001 0.020 0.932 0.007 0.027 0.010 68 H 0.003 0.001 0.018 0.928 0.008 0.034 0.008 69 S 0.001 0.001 0.008 0.957 0.003 0.024 0.006 70 L 0.001 0.001 0.003 0.982 0.003 0.006 0.005 71 D 0.001 0.001 0.002 0.988 0.002 0.006 0.002 72 F 0.001 0.001 0.001 0.991 0.001 0.006 0.001 73 L 0.001 0.001 0.001 0.993 0.001 0.004 0.001 74 I 0.001 0.001 0.001 0.992 0.001 0.004 0.001 75 E 0.002 0.001 0.002 0.985 0.001 0.008 0.001 76 V 0.002 0.001 0.004 0.979 0.001 0.012 0.002 77 M 0.006 0.001 0.007 0.968 0.002 0.014 0.003 78 I 0.005 0.001 0.012 0.936 0.005 0.038 0.004 79 G 0.007 0.001 0.013 0.893 0.010 0.068 0.008 80 Y 0.011 0.002 0.019 0.805 0.021 0.123 0.020 81 G 0.010 0.002 0.027 0.709 0.053 0.168 0.030 82 M 0.026 0.004 0.056 0.721 0.042 0.096 0.055 83 A 0.052 0.007 0.044 0.700 0.041 0.083 0.074 84 Y 0.027 0.003 0.026 0.847 0.019 0.044 0.034 85 Q 0.034 0.002 0.044 0.820 0.025 0.043 0.032 86 E 0.036 0.003 0.070 0.766 0.028 0.051 0.046 87 H 0.049 0.005 0.064 0.753 0.019 0.055 0.055 88 Q 0.042 0.005 0.062 0.700 0.035 0.107 0.050 89 T 0.044 0.007 0.042 0.693 0.039 0.108 0.068 90 L 0.023 0.004 0.023 0.747 0.048 0.045 0.110 91 R 0.012 0.003 0.013 0.846 0.029 0.044 0.053 92 G 0.006 0.002 0.016 0.850 0.023 0.071 0.032 93 I 0.003 0.001 0.010 0.900 0.019 0.036 0.030 94 Q 0.003 0.001 0.006 0.935 0.013 0.025 0.016 95 Q 0.004 0.001 0.008 0.927 0.015 0.033 0.013 96 E 0.001 0.001 0.006 0.937 0.010 0.032 0.013 97 I 0.001 0.001 0.003 0.962 0.005 0.015 0.013 98 K 0.001 0.001 0.002 0.983 0.002 0.011 0.002 99 S 0.001 0.001 0.002 0.978 0.002 0.016 0.002 100 E 0.001 0.001 0.001 0.988 0.001 0.008 0.001 101 I 0.001 0.001 0.001 0.996 0.001 0.002 0.001 102 E 0.001 0.001 0.001 0.994 0.001 0.003 0.001 103 I 0.001 0.001 0.001 0.990 0.001 0.008 0.001 104 A 0.001 0.001 0.004 0.982 0.001 0.011 0.002 105 A 0.001 0.001 0.013 0.924 0.004 0.058 0.002 106 N 0.001 0.001 0.026 0.829 0.008 0.129 0.007 107 V 0.001 0.002 0.056 0.719 0.041 0.141 0.042 108 Q 0.004 0.006 0.036 0.376 0.066 0.430 0.081 109 Q 0.005 0.012 0.043 0.138 0.007 0.397 0.398 110 T 0.001 0.001 0.001 0.002 0.002 0.001 0.995