# TARGET T0236 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0236.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 5.7468 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.252 0.252 0.284 0.066 0.060 0.028 0.024 0.005 0.023 0.006 0.001 2 D 0.278 0.085 0.338 0.057 0.020 0.119 0.058 0.005 0.032 0.006 0.002 3 F 0.841 0.031 0.033 0.065 0.005 0.011 0.005 0.002 0.005 0.001 0.001 4 R 0.947 0.015 0.020 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 5 E 0.978 0.004 0.008 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 6 V 0.981 0.003 0.004 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 7 I 0.979 0.003 0.004 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 E 0.986 0.002 0.004 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 Q 0.981 0.002 0.005 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 R 0.962 0.003 0.004 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 Y 0.991 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 H 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 Q 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 L 0.993 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 L 0.992 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 S 0.994 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 R 0.983 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 Y 0.958 0.002 0.002 0.036 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 I 0.915 0.011 0.020 0.041 0.001 0.006 0.002 0.001 0.003 0.001 0.001 20 A 0.934 0.007 0.019 0.035 0.001 0.002 0.001 0.001 0.001 0.001 0.001 21 E 0.566 0.020 0.036 0.335 0.009 0.010 0.011 0.005 0.007 0.001 0.001 22 L 0.288 0.121 0.317 0.121 0.014 0.057 0.031 0.003 0.046 0.001 0.001 23 T 0.285 0.161 0.248 0.104 0.072 0.051 0.035 0.009 0.022 0.012 0.001 24 E 0.804 0.037 0.039 0.073 0.010 0.016 0.010 0.004 0.005 0.002 0.001 25 T 0.841 0.044 0.041 0.059 0.005 0.004 0.002 0.001 0.003 0.001 0.001 26 S 0.845 0.043 0.052 0.028 0.011 0.008 0.004 0.001 0.007 0.001 0.001 27 L 0.879 0.028 0.046 0.029 0.003 0.010 0.001 0.001 0.002 0.001 0.001 28 Y 0.868 0.047 0.029 0.033 0.010 0.005 0.002 0.001 0.003 0.001 0.001 29 Q 0.817 0.052 0.045 0.047 0.012 0.011 0.006 0.002 0.007 0.001 0.001 30 A 0.880 0.022 0.041 0.037 0.003 0.010 0.004 0.001 0.003 0.001 0.001 31 Q 0.884 0.025 0.034 0.044 0.004 0.005 0.002 0.001 0.002 0.001 0.001 32 K 0.871 0.024 0.034 0.043 0.008 0.005 0.008 0.003 0.002 0.001 0.001 33 F 0.700 0.049 0.070 0.146 0.009 0.011 0.008 0.001 0.005 0.001 0.001 34 S 0.468 0.090 0.300 0.055 0.039 0.021 0.002 0.002 0.016 0.006 0.001 35 R 0.989 0.001 0.002 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 K 0.987 0.001 0.002 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 T 0.986 0.001 0.002 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 I 0.964 0.007 0.006 0.020 0.001 0.002 0.001 0.001 0.001 0.001 0.001 39 E 0.870 0.028 0.042 0.048 0.004 0.004 0.002 0.001 0.002 0.001 0.001 40 H 0.352 0.033 0.056 0.519 0.015 0.003 0.013 0.005 0.002 0.002 0.001 41 Q 0.037 0.010 0.032 0.129 0.004 0.039 0.702 0.027 0.018 0.002 0.001 42 I 0.003 0.519 0.360 0.001 0.010 0.019 0.002 0.001 0.088 0.001 0.001 43 P 0.003 0.002 0.969 0.001 0.001 0.020 0.001 0.001 0.002 0.001 0.004 44 P 0.865 0.002 0.115 0.007 0.001 0.004 0.001 0.001 0.001 0.001 0.006 45 E 0.956 0.004 0.017 0.015 0.002 0.001 0.001 0.003 0.001 0.001 0.001 46 E 0.935 0.006 0.033 0.021 0.001 0.002 0.001 0.001 0.001 0.001 0.001 47 I 0.952 0.013 0.018 0.008 0.001 0.004 0.001 0.001 0.001 0.001 0.001 48 I 0.972 0.011 0.008 0.004 0.001 0.003 0.001 0.001 0.001 0.001 0.001 49 S 0.974 0.005 0.004 0.008 0.001 0.004 0.001 0.001 0.001 0.001 0.001 50 I 0.961 0.004 0.001 0.031 0.001 0.002 0.001 0.001 0.001 0.001 0.001 51 H 0.940 0.006 0.010 0.027 0.001 0.009 0.002 0.001 0.003 0.001 0.001 52 R 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 K 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 V 0.985 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 L 0.990 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 K 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 E 0.953 0.001 0.001 0.045 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 L 0.679 0.005 0.024 0.286 0.001 0.002 0.001 0.001 0.001 0.001 0.001 59 Y 0.452 0.049 0.153 0.013 0.019 0.009 0.087 0.011 0.172 0.036 0.001 60 P 0.699 0.001 0.257 0.025 0.001 0.004 0.001 0.001 0.001 0.001 0.013 61 S 0.214 0.020 0.119 0.541 0.009 0.034 0.031 0.019 0.012 0.001 0.001 62 L 0.022 0.133 0.669 0.004 0.009 0.038 0.003 0.001 0.120 0.001 0.001 63 P 0.625 0.004 0.342 0.012 0.001 0.009 0.001 0.001 0.001 0.001 0.005 64 E 0.947 0.002 0.014 0.018 0.002 0.001 0.002 0.009 0.001 0.004 0.001 65 D 0.867 0.003 0.019 0.091 0.002 0.008 0.004 0.003 0.002 0.001 0.001 66 V 0.923 0.009 0.014 0.046 0.001 0.005 0.001 0.001 0.002 0.001 0.001 67 F 0.943 0.012 0.011 0.027 0.001 0.004 0.001 0.001 0.001 0.001 0.001 68 H 0.943 0.014 0.008 0.026 0.004 0.002 0.001 0.001 0.001 0.001 0.001 69 S 0.936 0.013 0.008 0.032 0.004 0.002 0.001 0.001 0.002 0.001 0.001 70 L 0.991 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 71 D 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 72 F 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 73 L 0.995 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 74 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 75 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 76 V 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 77 M 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 78 I 0.978 0.001 0.001 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 79 G 0.960 0.002 0.003 0.025 0.001 0.001 0.003 0.003 0.001 0.001 0.001 80 Y 0.842 0.007 0.008 0.130 0.004 0.002 0.003 0.001 0.001 0.001 0.001 81 G 0.869 0.008 0.022 0.046 0.010 0.007 0.013 0.017 0.002 0.005 0.001 82 M 0.869 0.032 0.028 0.052 0.006 0.007 0.002 0.001 0.002 0.001 0.001 83 A 0.835 0.025 0.054 0.064 0.007 0.007 0.004 0.002 0.002 0.001 0.001 84 Y 0.743 0.029 0.033 0.138 0.009 0.015 0.014 0.006 0.011 0.001 0.001 85 Q 0.832 0.051 0.045 0.033 0.006 0.010 0.013 0.002 0.007 0.001 0.001 86 E 0.908 0.017 0.043 0.018 0.003 0.006 0.003 0.001 0.001 0.001 0.001 87 H 0.897 0.012 0.011 0.066 0.003 0.006 0.003 0.001 0.003 0.001 0.001 88 Q 0.900 0.026 0.025 0.030 0.005 0.006 0.004 0.001 0.002 0.001 0.001 89 T 0.874 0.030 0.030 0.042 0.006 0.008 0.003 0.001 0.005 0.001 0.001 90 L 0.831 0.015 0.022 0.121 0.001 0.005 0.001 0.001 0.003 0.001 0.001 91 R 0.843 0.015 0.079 0.048 0.002 0.002 0.007 0.001 0.002 0.001 0.001 92 G 0.624 0.002 0.017 0.067 0.006 0.002 0.057 0.206 0.001 0.018 0.001 93 I 0.792 0.022 0.115 0.052 0.002 0.010 0.002 0.001 0.003 0.001 0.001 94 Q 0.819 0.027 0.094 0.042 0.002 0.009 0.004 0.001 0.003 0.001 0.001 95 Q 0.887 0.022 0.037 0.027 0.003 0.010 0.008 0.001 0.004 0.001 0.001 96 E 0.887 0.027 0.049 0.021 0.003 0.006 0.002 0.001 0.003 0.001 0.001 97 I 0.955 0.006 0.014 0.018 0.001 0.004 0.001 0.001 0.001 0.001 0.001 98 K 0.988 0.002 0.004 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 99 S 0.994 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 100 E 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 101 I 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 102 E 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 103 I 0.973 0.001 0.001 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 A 0.966 0.001 0.003 0.027 0.001 0.001 0.001 0.001 0.001 0.001 0.001 105 A 0.967 0.002 0.008 0.019 0.001 0.001 0.002 0.001 0.001 0.001 0.001 106 N 0.813 0.002 0.009 0.156 0.003 0.003 0.009 0.004 0.001 0.001 0.001 107 V 0.692 0.021 0.044 0.222 0.003 0.010 0.003 0.001 0.005 0.001 0.001 108 Q 0.369 0.135 0.188 0.145 0.015 0.069 0.029 0.003 0.047 0.001 0.001 109 Q 0.297 0.122 0.207 0.221 0.009 0.075 0.034 0.003 0.031 0.001 0.001 110 T 0.228 0.223 0.273 0.101 0.094 0.031 0.012 0.007 0.020 0.010 0.001