# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1r5qA 102 1.69e-03 unknown_sccs -965 1v2zA 111 5.71e-03 1q6aA 107 1.35e-02 unknown_sccs -960 1a87 321 5.72e-02 1a87 f.1.1.1 43380 1hsr 344 3.51e-01 1arv a.93.1.1 18592 1aru 344 3.99e-01 1arv a.93.1.1 18589 1arv 344 3.99e-01 1arv a.93.1.1 18590 1lycA 343 5.62e-01 a.93.1.1 74344 1jfiB 179 6.09e-01 1jfiB a.22.1.3 62937 1kktA 511 6.21e-01 a.102.2.1 68687 1gvhA 396 7.31e-01 a.1.1.2 70601 b.43.4.2 70602 c.25.1.5 70603 1b0b 142 8.40e-01 2fal a.1.1.2 15010 1p49A 562 8.89e-01 c.76.1.2 -8432 1dvpA 220 1.05e+00 1dvpA a.118.9.2 19216 g.50.1.1 45358 1s9pA 227 1.10e+00 1qlaC 256 1.15e+00 1qlaC f.21.2.1 43722 1moh 142 1.15e+00 1flp a.1.1.2 15012 1flp 142 1.17e+00 1flp a.1.1.2 15011 1f5xA 208 1.23e+00 1f5xA a.87.1.1 18516 1aj8A 371 1.37e+00 1aj8A a.103.1.1 18900 1hz4A 373 1.56e+00 a.118.8.2 65960 1trlA 62 1.60e+00 1hyt j.78.1.1 18263 1e2uA 553 1.73e+00 1e1dA e.26.1.1 43362 1gntA 553 1.73e+00 e.26.1.1 70290 1iqpA 327 1.76e+00 a.80.1.1 62649 c.37.1.20 62650 1sr7A 259 1.76e+00 1p8cA 145 1.79e+00 unknown_sccs -1927 1keiA 316 2.02e+00 d.92.1.2 77349 6tmnE 316 2.02e+00 1hyt d.92.1.2 59071 1hyt 316 2.02e+00 1hyt d.92.1.2 59005 8tlnE 316 2.02e+00 1hyt d.92.1.2 59075 2tmnE 316 2.06e+00 1hyt d.92.1.2 59055 1dlyA 164 2.40e+00 1dlyA a.1.1.1 14983 1sxjE 354 2.49e+00 1a28A 256 2.66e+00 1a28A a.123.1.1 19290 1hbnA 549 3.40e+00 1mroA a.89.1.1 60898 d.58.31.2 60899 1kx5A 135 3.45e+00 a.22.1.1 77593 1fnnA 389 3.71e+00 1fnnA a.4.5.11 16129 c.37.1.20 32426 1vkeA 133 3.72e+00 1axn 323 3.75e+00 1avc a.65.1.1 18149 1jvsA 400 3.81e+00 a.69.3.1 77187 c.2.1.3 77188 d.81.1.3 77189 1qusA 322 3.96e+00 1ltm d.2.1.6 36991 1hvd 319 4.08e+00 1avc a.65.1.1 18154 1kpsB 171 4.23e+00 a.118.12.1 68787 1kmmA 424 4.62e+00 1adjA c.51.1.1 33174 d.104.1.1 40723 1mroA 548 4.81e+00 1mroA a.89.1.1 18525 d.58.31.2 39443 1on0A 158 4.85e+00 d.108.1.1 87095 1ufhA 180 5.01e+00 d.108.1.1 88485 1sctB 151 5.14e+00 3sdhA a.1.1.2 15003 1ltm 320 5.62e+00 1ltm d.2.1.6 36992 1b4pA 217 5.80e+00 a.45.1.1 83158 c.47.1.5 83159 1j2jB 45 5.91e+00 a.7.8.1 84017 1fo3A 460 6.34e+00 1dl2A a.102.2.1 18845 1hq3C 136 6.40e+00 1aoiA a.22.1.1 16454 1mi1A 414 6.53e+00 a.169.1.1 79137 b.55.1.6 79138 1jmeA 455 6.86e+00 a.104.1.1 66885 1kvkA 395 6.89e+00 d.14.1.5 73060 d.58.26.3 73061 1aoiA 116 7.22e+00 1aoiA a.22.1.1 16462 1e1dA 553 7.30e+00 1e1dA e.26.1.1 43363 1m6kA 251 7.35e+00 e.3.1.1 78695 1k8eA 345 8.03e+00 1o17A 345 8.03e+00 a.46.2.1 80765 c.27.1.1 80766 1fyhA 258 8.70e+00 1d9cA a.26.1.3 16907 a.26.1.3 16908 1gwiA 411 8.81e+00 a.104.1.1 76364 1kyqA 274 8.86e+00 c.2.1.11 73281 e.37.1.1 73282 1ufaA 520 8.91e+00 unknown_sccs -421 unknown_sccs -6065 1g73A 162 9.02e+00 1fewA a.7.4.1 16332 1oq9A 363 9.49e+00 a.25.1.2 87257 1afrA 345 9.69e+00 1afrA a.25.1.2 16805 2ran 316 9.87e+00 1avc a.65.1.1 18170 1jdhA 529 9.88e+00 a.118.1.1 66549 1mhqA 148 9.89e+00 a.118.9.2 84973 1f07A 321 1.01e+01 1ezwA c.1.16.3 59560 1a8a 318 1.03e+01 1avc a.65.1.1 18169 1anxA 319 1.08e+01 1avc a.65.1.1 18161 1hm5A 558 1.12e+01 c.80.1.2 76717 1dl2A 511 1.13e+01 1dl2A a.102.2.1 18844 1gk4D 84 1.15e+01 h.1.20.1 70206 1fchA 368 1.18e+01 1fchA a.118.8.1 19212 1bgf 124 1.19e+01 1bgf a.90.1.1 18537 1knvA 293 1.19e+01 c.52.1.7 68707 1iomA 377 1.19e+01 a.103.1.1 83698 1b0nB 57 1.19e+01 1b0nB a.34.1.1 17002 1s3jA 155 1.22e+01 a.4.5.28 -227 1i27A 73 1.24e+01 1i27A a.4.5.30 61555 2mhr 118 1.25e+01 2mhr a.24.4.1 16581 1m7vA 363 1.25e+01 d.174.1.1 78748 1kkhA 317 1.26e+01 d.14.1.5 72645 d.58.26.3 72646 1huw 166 1.27e+01 1huw a.26.1.1 16831 1qwlA 505 1.32e+01 e.5.1.1 -11823 1cqxA 403 1.33e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1fm2A 169 1.35e+01 1fm2A d.153.1.2 59877 1fr0A 125 1.35e+01 2a0b a.24.10.1 59996 1ekeA 230 1.37e+01 1ekeA c.55.3.1 33572 1i7wA 538 1.39e+01 3bct a.118.1.1 61909 1srqA 341 1.40e+01 1uzxA 169 1.45e+01 d.20.1.2 -9409 1kw4A 89 1.48e+01 a.60.1.2 73077 3bct 457 1.48e+01 3bct a.118.1.1 19112 1o0uA 429 1.55e+01 c.118.1.1 80743 6prcM 323 1.59e+01 6prcM f.26.1.1 43435 1a8b 318 1.63e+01 1avc a.65.1.1 18171 1cz1A 394 1.68e+01 1cz1A c.1.8.3 28839 1eqcA 394 1.68e+01 1cz1A c.1.8.3 28811 1or0A 160 1.70e+01 d.153.1.2 -11415 1gk4C 84 1.70e+01 h.1.20.1 70205 1r71A 178 1.71e+01 1m33A 258 1.71e+01 c.69.1.26 78514 1mijA 152 1.74e+01 a.4.1.1 79150 1ujkA 147 1.74e+01 a.118.9.2 -1623 1jwgA 147 1.76e+01 a.118.9.2 71911 1hr6A 475 1.80e+01 1hr6A d.185.1.1 61164 d.185.1.1 61165 1qi9A 556 1.81e+01 1qhbA a.111.1.2 19053 1rh5C 53 1.88e+01 unknown_sccs -12204 1qv1A 195 1.90e+01 a.39.1.5 -830 1iawA 317 1.91e+01 c.52.1.9 62126 1i5rA 327 1.92e+01 c.2.1.2 83668 1keaA 221 2.03e+01 a.96.1.2 68491 1epwA 1290 2.07e+01 b.29.1.6 24269 b.42.4.2 25614 d.92.1.7 40305 h.4.2.1 45785 1mwmA 320 2.12e+01 c.55.1.1 79580 c.55.1.1 79581 1lwdA 413 2.13e+01 c.77.1.1 78265 1vkmA 297 2.13e+01 1n5dA 288 2.14e+01 c.2.1.2 80030 1hu4A 288 2.14e+01 1hu4A 1odoA 408 2.15e+01 a.104.1.1 -1463 1iznA 286 2.15e+01 e.43.1.1 83847 1nxhA 126 2.18e+01 unknown_sccs -1239 1qwoA 442 2.23e+01 1fewA 184 2.31e+01 1fewA a.7.4.1 16334 1ukfA 188 2.38e+01 unknown_sccs -8886 1em9A 154 2.40e+01 1d1dA a.73.1.1 18333 1k5hA 398 2.40e+01 a.69.3.1 68192 c.2.1.3 68193 d.81.1.3 68194 1qz4A 213 2.41e+01 unknown_sccs -1227 1or7A 194 2.45e+01 a.4.13.2 87332 a.177.1.1 87333 1mzgA 146 2.45e+01 d.224.1.1 79696 1nz6A 101 2.45e+01 a.2.3.1 86441 1nnwA 252 2.52e+01 d.159.1.5 80674 1ei1A 391 2.53e+01 1aj6 d.14.1.3 37570 d.122.1.2 41104 1jf0A 195 2.55e+01 1ej3A a.39.1.5 62926 1qc7A 101 2.58e+01 1qc7A a.118.14.1 18456 6gsvA 217 2.60e+01 1b8xA a.45.1.1 17633 c.47.1.5 32925 1d9cA 121 2.60e+01 1d9cA a.26.1.3 16901 1no4A 97 2.60e+01 h.1.24.1 85918 1g2nA 264 2.66e+01 1lbd a.123.1.1 60227 1colA 204 2.68e+01 1a87 f.1.1.1 43378 1gk4A 84 2.69e+01 h.1.20.1 70203 1gwcA 230 2.78e+01 a.45.1.1 70660 c.47.1.5 70661 1q4mA 221 2.82e+01 unknown_sccs -1910 1qhbA 596 2.83e+01 1qhbA a.111.1.2 19055 1fdt 327 2.83e+01 1fds c.2.1.2 29841 1fioA 196 2.84e+01 1fioA a.47.2.1 17773 1e4iA 447 2.87e+01 1e70M c.1.8.4 59225 1tr1A 447 2.93e+01 1e70M c.1.8.4 28957 1rfmA 344 3.01e+01 c.122.1.1 -8032 1jtvA 327 3.04e+01 c.2.1.2 84230 2ezi 75 3.07e+01 2ezh a.4.1.2 16028 1ht9A 76 3.09e+01 4icb a.39.1.1 61252 1q6hA 224 3.09e+01 d.26.1.1 -9487 1tbmA 326 3.12e+01 1a17 166 3.13e+01 1a17 a.118.8.1 19206 1fzaB 328 3.13e+01 3fib d.171.1.1 42480 h.1.8.1 45621 1j7iA 264 3.17e+01 1j7iA d.144.1.6 62694 1jq5A 370 3.20e+01 e.22.1.2 67084 1jqaA 370 3.21e+01 e.22.1.2 67085 1fds 327 3.23e+01 1fds c.2.1.2 29838 1spgB 147 3.24e+01 1cg5B a.1.1.2 15588 1iatA 557 3.30e+01 1dqrA c.80.1.2 62123 1kl1A 419 3.30e+01 c.67.1.4 72663 1kkjA 419 3.32e+01 c.67.1.4 72647 1a7w 69 3.34e+01 1a7w a.22.1.2 16477 1m3wA 32 3.35e+01 k.8.1.1 78575 1dkxA 219 3.39e+01 1dkzA unknown_sccs -446 unknown_sccs -3061 1fcbA 511 3.44e+01 1gox c.1.4.1 28620 d.120.1.1 41087 1keeE 1073 3.49e+01 a.92.1.1 68508 c.24.1.1 68509 c.30.1.1 68510 c.30.1.1 68511 d.142.1.2 68512 d.142.1.2 68513 1hta 69 3.51e+01 1a7w a.22.1.2 16476 6cts 433 3.53e+01 1csh a.103.1.1 18891 1ps1A 337 3.56e+01 1ps1A a.128.1.4 19450 2ezh 75 3.56e+01 2ezh a.4.1.2 16029 1qojA 63 3.63e+01 1qojA a.2.9.1 15716 4rnpA 883 3.70e+01 1cezA e.8.1.3 43113 1n4qB 377 3.71e+01 a.102.4.3 -1424 1e5rA 290 3.73e+01 1e5rA b.82.2.4 59276 1c3oE 1073 3.77e+01 a.92.1.1 18564 c.24.1.1 31493 c.30.1.1 31685 c.30.1.1 31686 d.142.1.2 41530 d.142.1.2 41531 1i6pA 220 3.77e+01 1ddzA c.53.2.1 61848 1qcwA 410 3.77e+01 1gox c.1.4.1 28622 1b67A 68 3.89e+01 1a7w a.22.1.2 16474 1v54E 109 3.89e+01 a.118.11.1 -1652 2occE 109 3.96e+01 2occE a.118.11.1 19224 1rw2A 152 3.97e+01 unknown_sccs -1645 1gz6A 319 3.99e+01 c.2.1.2 76410