# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1r5qA 102 1.41e-02 unknown_sccs -965 1bt0A 76 1.60e+00 1ubi d.15.1.1 37607 1v2zA 111 1.63e+00 1h6zA 913 2.07e+00 c.1.12.2 70906 c.8.1.1 70907 d.142.1.5 70908 1q6aA 107 2.49e+00 unknown_sccs -960 1otvA 259 2.56e+00 unknown_sccs -1915 1qagA 226 2.64e+00 1qagA a.40.1.1 17400 a.40.1.1 17401 1kjvA 284 2.89e+00 b.1.1.2 77421 d.19.1.1 77422 1e17A 150 3.25e+00 2hfh a.4.5.14 16143 1nddD 76 4.13e+00 1ubi d.15.1.1 37602 1nddA 76 4.59e+00 1ubi d.15.1.1 37599 1alvA 173 4.79e+00 1alvA a.39.1.8 17370 2chsA 127 5.03e+00 2chsA d.79.1.2 39764 1moh 142 5.46e+00 1flp a.1.1.2 15012 1dvpA 220 5.47e+00 1dvpA a.118.9.2 19216 g.50.1.1 45358 1kfuS 184 5.51e+00 a.39.1.8 68574 1soxA 466 6.01e+00 1soxA b.1.18.6 21947 d.120.1.1 41090 d.176.1.1 42563 1cbg 490 6.01e+00 1e70M c.1.8.4 28933 1jmoA 480 6.59e+00 e.1.1.1 77138 1dbfA 127 6.59e+00 2chsA d.79.1.2 39761 1b0b 142 7.21e+00 2fal a.1.1.2 15010 1f5xA 208 7.41e+00 1f5xA a.87.1.1 18516 1mi1A 414 7.91e+00 a.169.1.1 79137 b.55.1.6 79138 1pbwA 216 7.93e+00 1pbwA a.116.1.1 19103 1htn 182 8.03e+00 1htn d.169.1.1 42424 h.1.1.1 45426 1gk4D 84 8.09e+00 h.1.20.1 70206 1gk4C 84 8.38e+00 h.1.20.1 70205 1ipd 345 8.40e+00 1cnzA c.77.1.1 35038 1flp 142 8.78e+00 1flp a.1.1.2 15011 1gk4A 84 9.12e+00 h.1.20.1 70203 1idm 343 9.48e+00 1cnzA c.77.1.1 35035 1sctB 151 9.92e+00 3sdhA a.1.1.2 15003 1iuqA 367 1.01e+01 c.112.1.1 -8440 1dr8B 344 1.02e+01 1cnzA c.77.1.1 35052 1pf5A 131 1.05e+01 d.79.1.1 -10368 1e70M 501 1.14e+01 1e70M c.1.8.4 28926 1j7rA 86 1.16e+01 1j7rA a.39.1.5 62701 1k30A 368 1.27e+01 c.112.1.1 68067 1j77A 209 1.32e+01 1j77A a.132.1.2 62674 1e6qM 501 1.36e+01 1e70M c.1.8.4 28920 1e4mM 501 1.39e+01 1e70M c.1.8.4 59226 1hekA 131 1.49e+01 a.61.1.5 65818 1bak 119 1.60e+01 1bak b.55.1.1 26973 1im8A 244 1.62e+01 c.66.1.14 66212 1dcnA 424 1.72e+01 1auwA a.127.1.1 19420 1tq8A 163 1.78e+01 1mroC 247 1.84e+01 1mroC d.58.31.1 39437 1jfiB 179 1.90e+01 1jfiB a.22.1.3 62937 1jbwA 428 1.91e+01 c.59.1.2 62860 c.72.2.2 62861 2gliA 160 2.02e+01 2gliA g.37.1.1 45041 g.37.1.1 45042 g.37.1.1 45043 g.37.1.1 45044 g.37.1.1 45045 1lmeA 176 2.05e+01 d.167.1.1 84629 1i49A 224 2.13e+01 1i49A h.4.7.1 61679 1iznA 286 2.18e+01 e.43.1.1 83847 1i50K 120 2.26e+01 d.74.3.2 61765 1i4dA 224 2.29e+01 h.4.7.1 61682 1g2qA 187 2.29e+01 c.61.1.1 65117 1amuA 563 2.40e+01 1amuA e.23.1.1 43351 1hta 69 2.46e+01 1a7w a.22.1.2 16476 1hbnC 248 2.60e+01 1mroC d.58.31.1 60902 2occE 109 2.62e+01 2occE a.118.11.1 19224 1v54E 109 2.62e+01 a.118.11.1 -1652 1hueA 90 2.66e+01 1huuA a.55.1.1 17900 4ubpB 126 2.71e+01 1ubpB b.85.3.1 28345 1hz4A 373 2.75e+01 a.118.8.2 65960 1j6rA 214 2.77e+01 d.173.1.2 71598 1ubpB 122 2.88e+01 1ubpB b.85.3.1 28346 1fa0B 537 2.94e+01 1fa0B a.160.1.1 75839 d.218.1.3 75840 d.58.16.1 39336 1kpuA 274 2.97e+01 b.1.1.2 84456 d.19.1.1 84457 1nnwA 252 3.23e+01 d.159.1.5 80674 1dcnD 436 3.31e+01 1auwA a.127.1.1 19423 1fkx 349 3.31e+01 1a4mA c.1.9.1 29018 1i45A 248 3.51e+01 1amk c.1.1.1 61665 1gmwA 143 3.66e+01 b.107.1.1 65347 d.58.38.1 65348 1kw4A 89 3.80e+01 a.60.1.2 73077 1mai 131 3.81e+01 1mai b.55.1.1 26951