# TARGET T0236 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0236.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 5.42082 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.024 0.013 0.003 0.060 0.127 0.773 2 D 0.033 0.014 0.003 0.321 0.058 0.570 3 F 0.004 0.001 0.003 0.937 0.014 0.040 4 R 0.004 0.001 0.002 0.975 0.005 0.013 5 E 0.001 0.001 0.001 0.996 0.001 0.001 6 V 0.001 0.001 0.001 0.997 0.001 0.001 7 I 0.001 0.001 0.001 0.998 0.001 0.001 8 E 0.001 0.001 0.001 0.996 0.001 0.002 9 Q 0.001 0.001 0.001 0.996 0.002 0.001 10 R 0.001 0.001 0.001 0.992 0.002 0.004 11 Y 0.001 0.001 0.001 0.998 0.001 0.001 12 H 0.001 0.001 0.001 0.996 0.001 0.002 13 Q 0.001 0.001 0.001 0.996 0.001 0.002 14 L 0.001 0.001 0.001 0.997 0.001 0.001 15 L 0.001 0.001 0.001 0.997 0.001 0.001 16 S 0.001 0.001 0.003 0.994 0.002 0.001 17 R 0.001 0.001 0.004 0.989 0.004 0.003 18 Y 0.001 0.001 0.005 0.979 0.007 0.007 19 I 0.002 0.001 0.029 0.914 0.037 0.016 20 A 0.003 0.001 0.040 0.875 0.055 0.026 21 E 0.004 0.002 0.037 0.733 0.094 0.129 22 L 0.006 0.010 0.018 0.464 0.141 0.361 23 T 0.005 0.004 0.005 0.154 0.100 0.731 24 E 0.001 0.001 0.035 0.932 0.020 0.014 25 T 0.001 0.001 0.027 0.954 0.013 0.005 26 S 0.001 0.001 0.021 0.965 0.008 0.003 27 L 0.003 0.001 0.009 0.972 0.007 0.008 28 Y 0.003 0.001 0.008 0.973 0.009 0.007 29 Q 0.005 0.001 0.007 0.965 0.012 0.010 30 A 0.004 0.001 0.007 0.971 0.009 0.009 31 Q 0.006 0.001 0.015 0.945 0.019 0.015 32 K 0.006 0.001 0.026 0.911 0.032 0.024 33 F 0.010 0.004 0.019 0.857 0.040 0.070 34 S 0.008 0.003 0.010 0.798 0.032 0.149 35 R 0.001 0.001 0.013 0.956 0.012 0.017 36 K 0.003 0.001 0.013 0.963 0.014 0.007 37 T 0.005 0.001 0.015 0.955 0.017 0.007 38 I 0.009 0.001 0.017 0.945 0.013 0.015 39 E 0.008 0.001 0.045 0.897 0.040 0.009 40 H 0.022 0.001 0.064 0.752 0.101 0.060 41 Q 0.022 0.004 0.024 0.219 0.221 0.511 42 I 0.055 0.099 0.002 0.032 0.151 0.662 43 P 0.020 0.007 0.001 0.007 0.018 0.948 44 P 0.001 0.001 0.014 0.974 0.003 0.008 45 E 0.001 0.001 0.005 0.994 0.001 0.001 46 E 0.001 0.001 0.013 0.986 0.001 0.001 47 I 0.001 0.001 0.001 0.996 0.001 0.001 48 I 0.001 0.001 0.001 0.996 0.001 0.001 49 S 0.001 0.001 0.002 0.994 0.001 0.001 50 I 0.002 0.001 0.004 0.986 0.004 0.004 51 H 0.002 0.001 0.004 0.976 0.004 0.013 52 R 0.001 0.001 0.003 0.992 0.002 0.002 53 K 0.001 0.001 0.002 0.995 0.001 0.001 54 V 0.001 0.001 0.001 0.997 0.001 0.001 55 L 0.001 0.001 0.003 0.994 0.001 0.001 56 K 0.001 0.001 0.009 0.985 0.004 0.001 57 E 0.001 0.001 0.020 0.950 0.018 0.011 58 L 0.001 0.003 0.028 0.796 0.074 0.098 59 Y 0.001 0.006 0.048 0.083 0.743 0.120 60 P 0.001 0.001 0.208 0.052 0.681 0.057 61 S 0.001 0.002 0.145 0.031 0.740 0.083 62 L 0.002 0.016 0.020 0.016 0.712 0.234 63 P 0.001 0.007 0.007 0.077 0.268 0.640 64 E 0.001 0.001 0.025 0.920 0.042 0.012 65 D 0.001 0.001 0.028 0.924 0.040 0.008 66 V 0.001 0.001 0.030 0.942 0.020 0.005 67 F 0.001 0.001 0.011 0.971 0.007 0.009 68 H 0.003 0.001 0.011 0.970 0.006 0.009 69 S 0.001 0.001 0.004 0.989 0.002 0.004 70 L 0.001 0.001 0.003 0.989 0.003 0.004 71 D 0.001 0.001 0.002 0.995 0.001 0.001 72 F 0.001 0.001 0.003 0.996 0.001 0.001 73 L 0.001 0.001 0.001 0.998 0.001 0.001 74 I 0.001 0.001 0.003 0.996 0.001 0.001 75 E 0.001 0.001 0.003 0.996 0.001 0.001 76 V 0.001 0.001 0.008 0.982 0.006 0.003 77 M 0.002 0.001 0.016 0.966 0.012 0.003 78 I 0.003 0.001 0.016 0.952 0.020 0.008 79 G 0.002 0.001 0.014 0.951 0.017 0.016 80 Y 0.004 0.002 0.021 0.902 0.025 0.047 81 G 0.012 0.003 0.032 0.801 0.049 0.103 82 M 0.050 0.006 0.046 0.656 0.092 0.150 83 A 0.152 0.009 0.043 0.568 0.101 0.126 84 Y 0.152 0.009 0.052 0.565 0.114 0.108 85 Q 0.207 0.010 0.089 0.385 0.192 0.116 86 E 0.229 0.011 0.112 0.327 0.213 0.109 87 H 0.133 0.007 0.128 0.452 0.178 0.103 88 Q 0.093 0.008 0.093 0.437 0.164 0.204 89 T 0.065 0.013 0.070 0.394 0.148 0.309 90 L 0.020 0.007 0.091 0.636 0.143 0.103 91 R 0.013 0.003 0.030 0.798 0.094 0.064 92 G 0.010 0.002 0.021 0.814 0.073 0.080 93 I 0.004 0.001 0.004 0.969 0.012 0.011 94 Q 0.006 0.001 0.003 0.965 0.009 0.016 95 Q 0.006 0.001 0.006 0.971 0.010 0.007 96 E 0.007 0.001 0.007 0.967 0.009 0.010 97 I 0.001 0.001 0.003 0.987 0.003 0.006 98 K 0.001 0.001 0.003 0.989 0.003 0.005 99 S 0.001 0.001 0.002 0.994 0.002 0.002 100 E 0.001 0.001 0.001 0.994 0.002 0.003 101 I 0.001 0.001 0.002 0.994 0.002 0.001 102 E 0.001 0.001 0.003 0.991 0.004 0.002 103 I 0.001 0.001 0.005 0.982 0.007 0.005 104 A 0.002 0.001 0.012 0.959 0.017 0.009 105 A 0.001 0.001 0.014 0.958 0.017 0.009 106 N 0.002 0.001 0.024 0.883 0.036 0.054 107 V 0.015 0.005 0.034 0.647 0.083 0.216 108 Q 0.028 0.008 0.018 0.500 0.073 0.372 109 Q 0.028 0.012 0.007 0.334 0.062 0.557 110 T 0.006 0.002 0.001 0.014 0.024 0.954