# TARGET T0236 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0236.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 5.42082 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.003 0.007 0.564 0.001 0.014 0.256 0.001 0.001 0.001 0.075 0.038 0.031 0.009 2 D 0.003 0.018 0.379 0.001 0.011 0.495 0.001 0.001 0.002 0.019 0.025 0.008 0.037 3 F 0.002 0.005 0.102 0.001 0.023 0.815 0.001 0.001 0.001 0.016 0.015 0.005 0.014 4 R 0.001 0.001 0.018 0.002 0.011 0.950 0.001 0.001 0.001 0.009 0.008 0.002 0.001 5 E 0.001 0.001 0.011 0.001 0.009 0.951 0.001 0.001 0.001 0.006 0.013 0.002 0.004 6 V 0.002 0.002 0.009 0.001 0.008 0.954 0.001 0.001 0.001 0.004 0.013 0.001 0.004 7 I 0.001 0.002 0.028 0.001 0.004 0.942 0.001 0.001 0.002 0.006 0.011 0.002 0.001 8 E 0.001 0.001 0.017 0.001 0.004 0.962 0.001 0.001 0.001 0.005 0.008 0.001 0.002 9 Q 0.001 0.001 0.006 0.001 0.003 0.967 0.001 0.001 0.001 0.006 0.017 0.001 0.001 10 R 0.001 0.001 0.007 0.001 0.003 0.970 0.001 0.001 0.001 0.002 0.018 0.001 0.001 11 Y 0.001 0.001 0.005 0.001 0.002 0.983 0.001 0.001 0.001 0.002 0.008 0.001 0.001 12 H 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 13 Q 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 14 L 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.004 0.001 0.001 15 L 0.001 0.001 0.002 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 16 S 0.001 0.001 0.001 0.001 0.003 0.988 0.001 0.001 0.001 0.001 0.006 0.001 0.001 17 R 0.001 0.001 0.001 0.001 0.002 0.980 0.001 0.001 0.001 0.001 0.015 0.001 0.001 18 Y 0.001 0.001 0.003 0.001 0.003 0.977 0.001 0.001 0.001 0.002 0.015 0.001 0.001 19 I 0.001 0.001 0.012 0.001 0.005 0.957 0.001 0.001 0.001 0.005 0.018 0.001 0.001 20 A 0.001 0.001 0.012 0.001 0.014 0.867 0.001 0.001 0.001 0.015 0.089 0.001 0.001 21 E 0.001 0.001 0.026 0.001 0.013 0.782 0.001 0.001 0.001 0.016 0.159 0.001 0.001 22 L 0.001 0.006 0.127 0.001 0.015 0.610 0.001 0.001 0.001 0.103 0.133 0.002 0.002 23 T 0.001 0.003 0.364 0.001 0.007 0.496 0.001 0.001 0.001 0.071 0.051 0.001 0.005 24 E 0.001 0.001 0.007 0.001 0.009 0.962 0.001 0.001 0.001 0.005 0.017 0.001 0.001 25 T 0.001 0.001 0.004 0.001 0.011 0.966 0.001 0.001 0.001 0.003 0.014 0.001 0.001 26 S 0.001 0.001 0.009 0.001 0.013 0.954 0.001 0.001 0.001 0.003 0.014 0.001 0.002 27 L 0.001 0.001 0.008 0.001 0.006 0.969 0.001 0.001 0.001 0.003 0.007 0.001 0.002 28 Y 0.001 0.001 0.006 0.001 0.003 0.977 0.001 0.001 0.001 0.004 0.006 0.002 0.001 29 Q 0.001 0.001 0.007 0.001 0.003 0.976 0.001 0.001 0.001 0.002 0.006 0.001 0.002 30 A 0.001 0.001 0.012 0.001 0.005 0.968 0.001 0.001 0.001 0.003 0.007 0.001 0.002 31 Q 0.001 0.001 0.007 0.001 0.008 0.966 0.001 0.001 0.001 0.005 0.011 0.001 0.001 32 K 0.001 0.001 0.004 0.001 0.008 0.945 0.001 0.001 0.001 0.002 0.037 0.001 0.001 33 F 0.001 0.001 0.011 0.001 0.007 0.904 0.001 0.001 0.001 0.006 0.068 0.001 0.001 34 S 0.001 0.001 0.058 0.001 0.004 0.883 0.001 0.001 0.001 0.018 0.034 0.001 0.001 35 R 0.001 0.001 0.005 0.001 0.006 0.977 0.001 0.001 0.001 0.004 0.007 0.001 0.001 36 K 0.001 0.001 0.004 0.001 0.006 0.976 0.001 0.001 0.001 0.003 0.010 0.001 0.001 37 T 0.001 0.001 0.004 0.001 0.013 0.969 0.001 0.001 0.001 0.002 0.008 0.001 0.002 38 I 0.001 0.001 0.014 0.001 0.008 0.956 0.001 0.001 0.002 0.004 0.010 0.001 0.002 39 E 0.002 0.004 0.012 0.002 0.016 0.900 0.001 0.001 0.004 0.005 0.047 0.002 0.004 40 H 0.001 0.001 0.009 0.001 0.017 0.489 0.001 0.001 0.002 0.025 0.450 0.002 0.002 41 Q 0.001 0.004 0.102 0.001 0.014 0.104 0.001 0.001 0.003 0.140 0.619 0.001 0.009 42 I 0.001 0.039 0.542 0.001 0.001 0.007 0.001 0.001 0.010 0.374 0.003 0.023 0.002 43 P 0.001 0.022 0.923 0.001 0.001 0.003 0.001 0.001 0.004 0.031 0.001 0.001 0.015 44 P 0.001 0.001 0.005 0.001 0.020 0.948 0.001 0.001 0.001 0.002 0.024 0.001 0.001 45 E 0.001 0.001 0.001 0.001 0.020 0.969 0.001 0.001 0.001 0.001 0.010 0.001 0.001 46 E 0.001 0.001 0.001 0.001 0.022 0.971 0.001 0.001 0.001 0.001 0.003 0.001 0.001 47 I 0.001 0.001 0.003 0.001 0.003 0.988 0.001 0.001 0.001 0.001 0.003 0.001 0.001 48 I 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 49 S 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 50 I 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.001 51 H 0.001 0.001 0.005 0.001 0.001 0.992 0.001 0.001 0.001 0.002 0.001 0.001 0.001 52 R 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 K 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 V 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.002 0.001 0.001 55 L 0.001 0.001 0.001 0.001 0.002 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 56 K 0.001 0.001 0.002 0.001 0.012 0.954 0.001 0.001 0.001 0.001 0.030 0.001 0.001 57 E 0.001 0.001 0.001 0.001 0.014 0.855 0.001 0.001 0.001 0.001 0.129 0.001 0.001 58 L 0.001 0.001 0.011 0.001 0.036 0.719 0.001 0.001 0.001 0.004 0.229 0.001 0.001 59 Y 0.001 0.005 0.177 0.001 0.255 0.320 0.001 0.001 0.001 0.072 0.170 0.001 0.001 60 P 0.001 0.001 0.039 0.001 0.462 0.075 0.001 0.001 0.001 0.034 0.388 0.001 0.001 61 S 0.001 0.001 0.043 0.001 0.294 0.068 0.001 0.001 0.001 0.042 0.550 0.001 0.001 62 L 0.001 0.011 0.549 0.001 0.007 0.014 0.001 0.001 0.001 0.406 0.011 0.001 0.001 63 P 0.001 0.004 0.826 0.001 0.028 0.035 0.001 0.001 0.001 0.062 0.042 0.001 0.002 64 E 0.001 0.002 0.032 0.001 0.181 0.415 0.001 0.001 0.001 0.090 0.278 0.001 0.001 65 D 0.001 0.003 0.052 0.001 0.261 0.441 0.001 0.001 0.003 0.026 0.212 0.001 0.001 66 V 0.001 0.008 0.054 0.001 0.063 0.806 0.001 0.002 0.017 0.015 0.019 0.002 0.013 67 F 0.001 0.004 0.030 0.001 0.011 0.890 0.001 0.003 0.016 0.012 0.022 0.007 0.004 68 H 0.001 0.005 0.023 0.001 0.007 0.876 0.001 0.007 0.022 0.017 0.032 0.004 0.006 69 S 0.001 0.001 0.021 0.001 0.003 0.936 0.001 0.001 0.003 0.008 0.020 0.001 0.004 70 L 0.001 0.001 0.003 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.001 71 D 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 72 F 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 73 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 74 I 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 75 E 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.001 0.001 0.001 76 V 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 77 M 0.002 0.001 0.003 0.001 0.001 0.985 0.001 0.001 0.001 0.001 0.004 0.001 0.001 78 I 0.005 0.001 0.006 0.001 0.002 0.957 0.001 0.001 0.002 0.003 0.016 0.004 0.002 79 G 0.013 0.001 0.016 0.001 0.006 0.862 0.001 0.001 0.003 0.011 0.073 0.004 0.008 80 Y 0.012 0.004 0.061 0.001 0.013 0.699 0.002 0.001 0.005 0.033 0.153 0.008 0.009 81 G 0.007 0.008 0.108 0.003 0.034 0.595 0.001 0.001 0.007 0.057 0.144 0.010 0.026 82 M 0.012 0.006 0.108 0.004 0.058 0.519 0.001 0.001 0.003 0.074 0.170 0.023 0.021 83 A 0.023 0.008 0.105 0.003 0.038 0.569 0.002 0.001 0.005 0.050 0.141 0.019 0.036 84 Y 0.013 0.004 0.074 0.002 0.032 0.749 0.002 0.001 0.003 0.029 0.058 0.006 0.028 85 Q 0.007 0.001 0.033 0.001 0.028 0.852 0.001 0.001 0.002 0.011 0.041 0.016 0.007 86 E 0.012 0.003 0.031 0.001 0.037 0.812 0.002 0.001 0.002 0.018 0.047 0.006 0.028 87 H 0.022 0.003 0.043 0.010 0.028 0.795 0.002 0.001 0.003 0.013 0.043 0.011 0.026 88 Q 0.016 0.003 0.044 0.003 0.015 0.800 0.002 0.001 0.003 0.021 0.046 0.028 0.018 89 T 0.014 0.004 0.078 0.002 0.017 0.750 0.002 0.001 0.003 0.016 0.054 0.012 0.047 90 L 0.022 0.006 0.074 0.002 0.025 0.749 0.004 0.001 0.004 0.018 0.033 0.021 0.042 91 R 0.006 0.003 0.041 0.006 0.023 0.731 0.001 0.001 0.002 0.028 0.127 0.018 0.012 92 G 0.008 0.003 0.065 0.004 0.037 0.506 0.001 0.001 0.002 0.093 0.246 0.014 0.022 93 I 0.008 0.004 0.132 0.001 0.018 0.655 0.001 0.001 0.004 0.052 0.080 0.017 0.027 94 Q 0.003 0.004 0.084 0.001 0.010 0.829 0.001 0.001 0.003 0.020 0.025 0.003 0.015 95 Q 0.002 0.001 0.047 0.001 0.009 0.898 0.001 0.001 0.002 0.011 0.016 0.009 0.003 96 E 0.001 0.004 0.042 0.001 0.010 0.908 0.001 0.001 0.002 0.007 0.012 0.002 0.010 97 I 0.001 0.002 0.043 0.001 0.008 0.916 0.001 0.001 0.003 0.009 0.012 0.002 0.003 98 K 0.001 0.001 0.025 0.001 0.011 0.896 0.001 0.001 0.001 0.032 0.030 0.002 0.001 99 S 0.001 0.002 0.043 0.001 0.011 0.832 0.001 0.001 0.002 0.037 0.068 0.001 0.004 100 E 0.001 0.001 0.015 0.001 0.003 0.962 0.001 0.001 0.001 0.004 0.013 0.001 0.001 101 I 0.001 0.001 0.004 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.002 0.001 0.001 102 E 0.001 0.001 0.002 0.001 0.002 0.991 0.001 0.001 0.001 0.001 0.004 0.001 0.001 103 I 0.001 0.001 0.001 0.001 0.002 0.984 0.001 0.001 0.001 0.001 0.011 0.001 0.001 104 A 0.001 0.001 0.005 0.001 0.006 0.943 0.001 0.001 0.001 0.002 0.043 0.001 0.001 105 A 0.001 0.001 0.006 0.001 0.024 0.811 0.001 0.001 0.001 0.006 0.152 0.001 0.001 106 N 0.001 0.001 0.014 0.001 0.050 0.628 0.001 0.001 0.001 0.019 0.288 0.001 0.001 107 V 0.001 0.002 0.073 0.001 0.131 0.573 0.001 0.001 0.002 0.038 0.180 0.001 0.001 108 Q 0.001 0.013 0.118 0.001 0.098 0.460 0.001 0.001 0.008 0.065 0.226 0.003 0.006 109 Q 0.001 0.015 0.271 0.003 0.068 0.278 0.001 0.001 0.008 0.134 0.201 0.008 0.012 110 T 0.001 0.009 0.663 0.002 0.017 0.061 0.001 0.001 0.006 0.181 0.044 0.006 0.009