# TARGET T0236 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0236.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 5.42082 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.003 0.001 0.008 0.471 0.013 0.018 0.486 2 D 0.003 0.006 0.010 0.827 0.004 0.019 0.130 3 F 0.002 0.001 0.016 0.873 0.010 0.037 0.060 4 R 0.001 0.001 0.008 0.945 0.005 0.015 0.024 5 E 0.001 0.001 0.005 0.977 0.003 0.008 0.007 6 V 0.001 0.001 0.004 0.975 0.002 0.010 0.008 7 I 0.001 0.001 0.002 0.980 0.002 0.013 0.003 8 E 0.001 0.001 0.001 0.988 0.002 0.007 0.003 9 Q 0.001 0.001 0.001 0.989 0.002 0.006 0.002 10 R 0.001 0.001 0.002 0.986 0.002 0.006 0.004 11 Y 0.001 0.001 0.002 0.992 0.001 0.005 0.001 12 H 0.001 0.001 0.002 0.995 0.001 0.002 0.001 13 Q 0.001 0.001 0.001 0.996 0.001 0.003 0.001 14 L 0.001 0.001 0.001 0.995 0.001 0.003 0.001 15 L 0.001 0.001 0.001 0.996 0.001 0.003 0.001 16 S 0.001 0.001 0.001 0.995 0.001 0.003 0.001 17 R 0.001 0.001 0.002 0.985 0.001 0.013 0.001 18 Y 0.001 0.001 0.003 0.967 0.001 0.025 0.003 19 I 0.001 0.001 0.015 0.935 0.005 0.034 0.010 20 A 0.002 0.001 0.022 0.854 0.009 0.101 0.011 21 E 0.002 0.001 0.015 0.687 0.016 0.251 0.028 22 L 0.005 0.006 0.008 0.403 0.175 0.174 0.228 23 T 0.008 0.007 0.006 0.152 0.164 0.051 0.612 24 E 0.002 0.001 0.028 0.883 0.014 0.041 0.031 25 T 0.003 0.001 0.032 0.923 0.006 0.023 0.013 26 S 0.003 0.002 0.027 0.928 0.004 0.012 0.023 27 L 0.002 0.001 0.008 0.968 0.003 0.010 0.009 28 Y 0.002 0.001 0.005 0.972 0.003 0.013 0.005 29 Q 0.003 0.001 0.006 0.965 0.003 0.015 0.008 30 A 0.005 0.001 0.010 0.948 0.005 0.014 0.016 31 Q 0.007 0.002 0.012 0.931 0.008 0.031 0.010 32 K 0.002 0.001 0.007 0.947 0.006 0.033 0.005 33 F 0.002 0.001 0.005 0.935 0.009 0.027 0.020 34 S 0.002 0.001 0.006 0.889 0.008 0.031 0.062 35 R 0.001 0.001 0.007 0.980 0.001 0.010 0.002 36 K 0.001 0.001 0.008 0.985 0.001 0.005 0.001 37 T 0.001 0.001 0.013 0.979 0.001 0.005 0.001 38 I 0.002 0.001 0.008 0.969 0.002 0.017 0.002 39 E 0.004 0.003 0.033 0.867 0.007 0.081 0.005 40 H 0.004 0.001 0.023 0.440 0.024 0.502 0.006 41 Q 0.006 0.003 0.009 0.106 0.162 0.598 0.116 42 I 0.008 0.021 0.001 0.004 0.285 0.003 0.679 43 P 0.004 0.010 0.001 0.001 0.015 0.001 0.968 44 P 0.001 0.001 0.112 0.835 0.003 0.044 0.005 45 E 0.001 0.001 0.094 0.881 0.002 0.023 0.001 46 E 0.001 0.001 0.149 0.838 0.001 0.006 0.004 47 I 0.001 0.001 0.032 0.958 0.001 0.005 0.003 48 I 0.003 0.001 0.028 0.943 0.004 0.018 0.004 49 S 0.002 0.002 0.016 0.930 0.003 0.046 0.001 50 I 0.009 0.009 0.014 0.846 0.014 0.078 0.030 51 H 0.001 0.002 0.019 0.914 0.005 0.034 0.025 52 R 0.001 0.001 0.004 0.994 0.001 0.001 0.001 53 K 0.001 0.001 0.005 0.993 0.001 0.002 0.001 54 V 0.001 0.001 0.006 0.989 0.001 0.005 0.001 55 L 0.001 0.001 0.016 0.978 0.001 0.006 0.001 56 K 0.001 0.001 0.032 0.920 0.001 0.047 0.001 57 E 0.001 0.001 0.031 0.741 0.001 0.226 0.001 58 L 0.001 0.002 0.045 0.610 0.037 0.277 0.029 59 Y 0.001 0.005 0.115 0.161 0.156 0.135 0.428 60 P 0.001 0.001 0.187 0.070 0.042 0.674 0.027 61 S 0.001 0.003 0.153 0.058 0.056 0.693 0.037 62 L 0.004 0.010 0.014 0.017 0.395 0.017 0.543 63 P 0.006 0.009 0.016 0.028 0.032 0.026 0.882 64 E 0.005 0.008 0.211 0.377 0.091 0.241 0.067 65 D 0.008 0.005 0.294 0.398 0.041 0.208 0.047 66 V 0.016 0.008 0.166 0.656 0.023 0.053 0.078 67 F 0.040 0.015 0.047 0.646 0.061 0.064 0.127 68 H 0.065 0.018 0.028 0.582 0.110 0.080 0.117 69 S 0.015 0.003 0.011 0.897 0.011 0.027 0.036 70 L 0.004 0.001 0.011 0.964 0.004 0.006 0.011 71 D 0.003 0.001 0.012 0.969 0.005 0.005 0.007 72 F 0.002 0.001 0.009 0.983 0.001 0.004 0.001 73 L 0.001 0.001 0.001 0.997 0.001 0.001 0.001 74 I 0.001 0.001 0.001 0.998 0.001 0.001 0.001 75 E 0.001 0.001 0.001 0.998 0.001 0.001 0.001 76 V 0.001 0.001 0.001 0.995 0.001 0.003 0.001 77 M 0.001 0.001 0.001 0.993 0.001 0.006 0.001 78 I 0.001 0.001 0.001 0.984 0.001 0.014 0.001 79 G 0.001 0.001 0.001 0.974 0.002 0.021 0.001 80 Y 0.001 0.001 0.002 0.968 0.002 0.026 0.001 81 G 0.001 0.001 0.005 0.946 0.004 0.039 0.004 82 M 0.002 0.001 0.012 0.937 0.004 0.038 0.007 83 A 0.007 0.002 0.022 0.838 0.013 0.094 0.024 84 Y 0.010 0.003 0.041 0.784 0.016 0.111 0.035 85 Q 0.026 0.004 0.052 0.695 0.042 0.128 0.053 86 E 0.067 0.007 0.055 0.620 0.049 0.101 0.101 87 H 0.059 0.007 0.079 0.684 0.021 0.077 0.074 88 Q 0.073 0.007 0.106 0.558 0.074 0.088 0.093 89 T 0.089 0.006 0.072 0.589 0.048 0.090 0.104 90 L 0.074 0.006 0.030 0.680 0.046 0.045 0.119 91 R 0.047 0.005 0.015 0.733 0.045 0.093 0.062 92 G 0.058 0.007 0.015 0.568 0.095 0.120 0.136 93 I 0.019 0.001 0.008 0.868 0.015 0.029 0.059 94 Q 0.023 0.002 0.007 0.910 0.014 0.019 0.026 95 Q 0.013 0.001 0.007 0.927 0.015 0.010 0.028 96 E 0.008 0.001 0.005 0.956 0.006 0.008 0.015 97 I 0.004 0.001 0.002 0.977 0.003 0.006 0.008 98 K 0.001 0.001 0.002 0.988 0.001 0.008 0.001 99 S 0.001 0.001 0.002 0.983 0.001 0.012 0.001 100 E 0.001 0.001 0.001 0.993 0.001 0.004 0.002 101 I 0.001 0.001 0.001 0.998 0.001 0.001 0.001 102 E 0.001 0.001 0.001 0.997 0.001 0.001 0.001 103 I 0.001 0.001 0.002 0.993 0.001 0.004 0.001 104 A 0.001 0.001 0.003 0.984 0.001 0.011 0.001 105 A 0.001 0.001 0.009 0.906 0.003 0.079 0.003 106 N 0.003 0.001 0.014 0.760 0.008 0.199 0.016 107 V 0.009 0.007 0.029 0.695 0.034 0.115 0.112 108 Q 0.012 0.013 0.054 0.462 0.080 0.208 0.170 109 Q 0.020 0.012 0.023 0.323 0.056 0.123 0.442 110 T 0.004 0.002 0.003 0.038 0.024 0.012 0.917