# TARGET T0236 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0236.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 5.42082 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.164 0.188 0.338 0.071 0.096 0.033 0.044 0.014 0.039 0.013 0.001 2 D 0.235 0.078 0.417 0.045 0.015 0.128 0.041 0.003 0.028 0.007 0.003 3 F 0.762 0.045 0.066 0.080 0.005 0.024 0.005 0.002 0.009 0.002 0.001 4 R 0.950 0.007 0.019 0.017 0.002 0.001 0.001 0.001 0.001 0.001 0.001 5 E 0.978 0.002 0.005 0.007 0.001 0.001 0.003 0.003 0.001 0.001 0.001 6 V 0.986 0.001 0.002 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 7 I 0.981 0.002 0.003 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 E 0.991 0.001 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 Q 0.986 0.001 0.002 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 R 0.963 0.001 0.002 0.032 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 Y 0.986 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 H 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 Q 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 L 0.992 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 L 0.992 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 S 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 R 0.985 0.001 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 Y 0.962 0.002 0.002 0.033 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 I 0.930 0.009 0.015 0.035 0.001 0.005 0.002 0.001 0.003 0.001 0.001 20 A 0.945 0.006 0.016 0.029 0.001 0.002 0.001 0.001 0.001 0.001 0.001 21 E 0.646 0.016 0.031 0.272 0.007 0.009 0.009 0.004 0.006 0.001 0.001 22 L 0.426 0.086 0.221 0.151 0.010 0.045 0.023 0.002 0.035 0.001 0.001 23 T 0.340 0.131 0.229 0.112 0.058 0.054 0.034 0.007 0.021 0.013 0.001 24 E 0.857 0.019 0.029 0.062 0.006 0.010 0.008 0.004 0.003 0.001 0.001 25 T 0.870 0.022 0.035 0.059 0.004 0.004 0.002 0.001 0.002 0.001 0.001 26 S 0.912 0.016 0.028 0.027 0.004 0.005 0.003 0.001 0.004 0.001 0.001 27 L 0.906 0.018 0.033 0.032 0.002 0.006 0.001 0.001 0.001 0.001 0.001 28 Y 0.930 0.017 0.020 0.020 0.005 0.002 0.002 0.002 0.001 0.001 0.001 29 Q 0.904 0.020 0.021 0.037 0.005 0.005 0.003 0.001 0.003 0.001 0.001 30 A 0.914 0.014 0.027 0.032 0.001 0.006 0.002 0.001 0.002 0.001 0.001 31 Q 0.919 0.018 0.026 0.028 0.002 0.004 0.001 0.001 0.002 0.001 0.001 32 K 0.917 0.013 0.021 0.034 0.004 0.003 0.005 0.002 0.001 0.001 0.001 33 F 0.762 0.031 0.049 0.135 0.005 0.007 0.005 0.001 0.004 0.001 0.001 34 S 0.506 0.075 0.283 0.058 0.032 0.020 0.002 0.002 0.016 0.005 0.001 35 R 0.990 0.001 0.002 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 K 0.987 0.001 0.002 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 T 0.985 0.001 0.002 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 I 0.962 0.007 0.006 0.021 0.001 0.002 0.001 0.001 0.001 0.001 0.001 39 E 0.865 0.029 0.044 0.050 0.004 0.004 0.002 0.001 0.002 0.001 0.001 40 H 0.353 0.033 0.059 0.515 0.015 0.003 0.013 0.005 0.002 0.002 0.001 41 Q 0.036 0.010 0.031 0.128 0.004 0.038 0.706 0.027 0.017 0.002 0.001 42 I 0.002 0.521 0.359 0.001 0.010 0.019 0.002 0.001 0.087 0.001 0.001 43 P 0.003 0.002 0.969 0.001 0.001 0.020 0.001 0.001 0.002 0.001 0.004 44 P 0.866 0.002 0.114 0.007 0.001 0.004 0.001 0.001 0.001 0.001 0.005 45 E 0.958 0.004 0.016 0.015 0.002 0.001 0.001 0.002 0.001 0.001 0.001 46 E 0.935 0.006 0.032 0.021 0.001 0.002 0.001 0.001 0.001 0.001 0.001 47 I 0.949 0.014 0.020 0.009 0.001 0.004 0.001 0.001 0.001 0.001 0.001 48 I 0.968 0.012 0.009 0.004 0.001 0.004 0.001 0.001 0.001 0.001 0.001 49 S 0.973 0.006 0.005 0.008 0.002 0.004 0.001 0.001 0.001 0.001 0.001 50 I 0.959 0.004 0.001 0.031 0.001 0.002 0.001 0.001 0.001 0.001 0.001 51 H 0.928 0.007 0.012 0.032 0.001 0.012 0.002 0.001 0.004 0.001 0.001 52 R 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 K 0.988 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 V 0.975 0.001 0.001 0.024 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 L 0.987 0.001 0.001 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 K 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 E 0.960 0.001 0.001 0.037 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 L 0.744 0.002 0.014 0.237 0.001 0.002 0.001 0.001 0.001 0.001 0.001 59 Y 0.614 0.034 0.123 0.016 0.018 0.005 0.034 0.011 0.095 0.050 0.001 60 P 0.825 0.001 0.129 0.032 0.001 0.003 0.001 0.001 0.001 0.001 0.009 61 S 0.221 0.014 0.065 0.611 0.005 0.026 0.029 0.016 0.013 0.001 0.001 62 L 0.037 0.157 0.605 0.015 0.009 0.057 0.006 0.001 0.112 0.001 0.001 63 P 0.387 0.013 0.550 0.016 0.001 0.023 0.002 0.001 0.002 0.001 0.004 64 E 0.928 0.004 0.020 0.023 0.004 0.001 0.003 0.011 0.001 0.006 0.001 65 D 0.833 0.006 0.025 0.105 0.002 0.014 0.007 0.003 0.003 0.001 0.001 66 V 0.904 0.014 0.015 0.058 0.001 0.006 0.001 0.001 0.002 0.001 0.001 67 F 0.922 0.019 0.019 0.029 0.002 0.005 0.002 0.001 0.001 0.001 0.001 68 H 0.929 0.019 0.011 0.030 0.005 0.002 0.002 0.001 0.001 0.001 0.001 69 S 0.918 0.019 0.012 0.035 0.006 0.003 0.001 0.001 0.003 0.001 0.001 70 L 0.990 0.002 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 71 D 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 72 F 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 73 L 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 74 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 75 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 76 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 77 M 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 78 I 0.982 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 79 G 0.965 0.002 0.003 0.023 0.001 0.001 0.002 0.002 0.001 0.001 0.001 80 Y 0.855 0.006 0.007 0.122 0.003 0.002 0.003 0.001 0.001 0.001 0.001 81 G 0.880 0.008 0.020 0.044 0.009 0.006 0.012 0.015 0.002 0.004 0.001 82 M 0.875 0.030 0.026 0.051 0.006 0.006 0.002 0.001 0.002 0.001 0.001 83 A 0.834 0.025 0.052 0.066 0.007 0.007 0.004 0.002 0.002 0.001 0.001 84 Y 0.732 0.031 0.035 0.143 0.009 0.016 0.014 0.006 0.012 0.001 0.001 85 Q 0.828 0.052 0.046 0.033 0.006 0.010 0.014 0.002 0.007 0.001 0.001 86 E 0.905 0.018 0.044 0.018 0.003 0.006 0.003 0.001 0.001 0.001 0.001 87 H 0.896 0.012 0.011 0.066 0.003 0.006 0.003 0.001 0.003 0.001 0.001 88 Q 0.903 0.025 0.024 0.029 0.005 0.006 0.004 0.001 0.002 0.001 0.001 89 T 0.875 0.030 0.030 0.042 0.006 0.008 0.003 0.001 0.006 0.001 0.001 90 L 0.826 0.015 0.023 0.124 0.001 0.006 0.001 0.001 0.003 0.001 0.001 91 R 0.836 0.017 0.083 0.048 0.003 0.002 0.007 0.001 0.002 0.001 0.001 92 G 0.620 0.002 0.018 0.063 0.007 0.003 0.058 0.208 0.002 0.020 0.001 93 I 0.823 0.016 0.091 0.054 0.001 0.009 0.002 0.001 0.002 0.001 0.001 94 Q 0.845 0.022 0.073 0.043 0.002 0.008 0.004 0.001 0.002 0.001 0.001 95 Q 0.901 0.017 0.032 0.027 0.003 0.008 0.007 0.001 0.003 0.001 0.001 96 E 0.893 0.022 0.046 0.022 0.003 0.007 0.002 0.001 0.004 0.001 0.001 97 I 0.955 0.005 0.013 0.021 0.001 0.004 0.001 0.001 0.001 0.001 0.001 98 K 0.988 0.001 0.004 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 99 S 0.994 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 100 E 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 101 I 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 102 E 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 103 I 0.963 0.001 0.001 0.035 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 A 0.971 0.001 0.002 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 105 A 0.967 0.001 0.006 0.024 0.001 0.001 0.001 0.001 0.001 0.001 0.001 106 N 0.720 0.001 0.004 0.232 0.001 0.004 0.022 0.013 0.001 0.001 0.001 107 V 0.695 0.028 0.097 0.152 0.002 0.017 0.003 0.001 0.006 0.001 0.001 108 Q 0.653 0.062 0.125 0.103 0.007 0.027 0.011 0.002 0.008 0.001 0.001 109 Q 0.427 0.087 0.114 0.285 0.008 0.031 0.020 0.004 0.023 0.001 0.001 110 T 0.243 0.195 0.321 0.105 0.050 0.031 0.016 0.007 0.026 0.006 0.001