# List of top-scoring protein chains for T0236.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1r5qA 102 8.52e-03 unknown_sccs -965 1mxsA 225 4.51e-01 c.1.10.1 -5485 1a76 326 7.71e-01 1a76 a.60.7.1 18091 c.120.1.2 33361 1f5xA 208 8.57e-01 1f5xA a.87.1.1 18516 1iyjB 817 1.22e+00 a.170.1.1 76948 a.171.1.1 76949 b.40.4.3 76950 b.40.4.3 76951 b.40.4.3 76952 1r8jA 289 1.70e+00 1vj7A 393 1.75e+00 unknown_sccs -1265 unknown_sccs -9814 1owaA 156 1.80e+00 a.7.1.1 -388 1ed3A 275 2.05e+00 1agdA b.1.1.2 20847 d.19.1.1 38313 1kjmA 285 2.40e+00 b.1.1.2 77416 d.19.1.1 77417 1sto 213 2.83e+00 1opr c.61.1.1 34092 1lh0A 213 2.83e+00 c.61.1.1 73896 5csmA 256 2.93e+00 5csmA a.130.1.2 19494 1icxA 155 3.11e+00 d.129.3.1 71191 1l1qA 186 3.26e+00 c.61.1.1 77653 1q6aA 107 4.09e+00 unknown_sccs -960 1fnkA 127 4.22e+00 2chsA d.79.1.2 39777 1fnjA 127 4.28e+00 2chsA d.79.1.2 39776 1v2zA 111 4.29e+00 1dbfA 127 4.37e+00 2chsA d.79.1.2 39761 1rxwA 336 5.55e+00 a.60.7.1 -1041 c.120.1.2 -6680 3csmA 256 5.58e+00 5csmA a.130.1.2 19500 2ts1 419 6.12e+00 2ts1 c.26.1.1 31564 1aj3 110 7.70e+00 1cunA a.7.1.1 16319 1b00A 127 7.71e+00 3chy c.23.1.1 31122 1b3sD 90 8.07e+00 1ay7B c.9.1.1 30846 1ifc 132 8.11e+00 b.60.1.2 27173 1kczA 413 8.18e+00 c.1.11.2 68451 d.54.1.1 68452 1icm 131 8.29e+00 1hmt b.60.1.2 27174 1pu1A 94 8.57e+00 1icn 131 8.96e+00 1hmt b.60.1.2 27175 1ud9A 245 1.01e+01 1hfyA 123 1.04e+01 3lzt d.2.1.2 36604 1hmkA 124 1.05e+01 3lzt d.2.1.2 36603 1fkvA 124 1.05e+01 3lzt d.2.1.2 36602 1mjeA 649 1.05e+01 a.170.1.1 79193 a.171.1.1 79194 b.40.4.3 79195 b.40.4.3 79196 b.40.4.3 79197 1fkqA 124 1.05e+01 3lzt d.2.1.2 36601 1a19A 90 1.07e+01 1ay7B c.9.1.1 30831 1miuA 738 1.10e+01 a.170.1.1 79153 a.171.1.1 79154 b.40.4.3 79155 b.40.4.3 79156 b.40.4.3 79157 1b27D 90 1.16e+01 1ay7B c.9.1.1 30840 1s72F 120 1.18e+01 1ay7B 89 1.18e+01 1ay7B c.9.1.1 30836 1jj2F 119 1.19e+01 1ffkE d.79.3.1 63091 1iruI 234 1.21e+01 d.153.1.4 71360 1brsD 89 1.22e+01 1ay7B c.9.1.1 30825 1h0oA 390 1.25e+01 a.25.1.2 70845 1b2sD 90 1.27e+01 1ay7B c.9.1.1 30837 1isiA 265 1.35e+01 e.4.1.1 71394 1f6rA 123 1.37e+01 3lzt d.2.1.2 36606 1sa8A 106 1.43e+01 1j2zA 270 1.43e+01 b.81.1.1 -4797 1a57 116 1.48e+01 1hmt b.60.1.2 27181 1qnxA 209 1.54e+01 1qnxA d.111.1.1 40914 1uvxA 121 1.55e+01 a.1.1.1 -2 1hfzA 124 1.58e+01 3lzt d.2.1.2 36618 1kzwA 131 1.60e+01 b.60.1.2 84478 1ewiA 114 1.60e+01 1ewiA b.40.4.3 25302 1kzxA 131 1.60e+01 b.60.1.2 84479 1aeiA 315 1.60e+01 1avc a.65.1.1 18180 1dm5A 315 1.60e+01 1avc a.65.1.1 18186 1ifvA 155 1.68e+01 d.129.3.1 71204 1pxeA 63 1.69e+01 unknown_sccs -12873 1gmwD 143 1.69e+01 b.107.1.1 65353 d.58.38.1 65354 1gmuA 143 1.70e+01 b.107.1.1 65335 d.58.38.1 65336 1v7oA 165 1.72e+01 unknown_sccs -10249 1ogyA 802 1.72e+01 b.52.2.2 -4327 c.81.1.1 -8537 1dlyA 164 1.74e+01 1dlyA a.1.1.1 14983 1j1uA 306 1.75e+01 c.26.1.1 83980 1i94M 125 1.83e+01 1fjfM a.156.1.1 62004 1fjgM 126 1.84e+01 1fjfM a.156.1.1 16293 1i13A 221 1.86e+01 c.61.1.1 71098 1omwA 689 1.92e+01 a.91.1.1 87086 b.55.1.1 87087 d.144.1.7 87088 1zagA 274 1.93e+01 1agdA b.1.1.2 20851 d.19.1.1 38315 1i0iA 221 1.93e+01 c.61.1.1 71094 1h4rA 314 1.95e+01 a.11.2.1 65616 b.55.1.5 65617 d.15.1.4 65618 1i14A 221 1.96e+01 c.61.1.1 71100 1isnA 323 1.97e+01 a.11.2.1 71400 b.55.1.5 71401 d.15.1.4 71402 1cvuA 552 1.98e+01 1cqeA a.93.1.2 18716 g.3.11.1 44259 3pghA 587 1.98e+01 1cqeA a.93.1.2 18726 g.3.11.1 44269 1i0lA 221 2.01e+01 c.61.1.1 71096 1pxwA 128 2.05e+01 d.79.3.1 -10406 1p6gM 117 2.09e+01 i.1.1.1 87831 1a0dA 440 2.14e+01 1a0cA c.1.15.3 29533 1p18A 221 2.18e+01 2mhaA 270 2.18e+01 1agdA b.1.1.2 20803 d.19.1.1 38291 1j7qA 86 2.19e+01 1j7rA a.39.1.5 62700 1lk2A 274 2.20e+01 b.1.1.2 -2610 d.19.1.1 -9365 1namH 275 2.21e+01 b.1.1.2 85490 d.19.1.1 85491 1fo0H 276 2.21e+01 1agdA b.1.1.2 20797 d.19.1.1 38288 1n59A 276 2.21e+01 b.1.1.2 80008 d.19.1.1 80009 1fzoA 274 2.22e+01 1agdA b.1.1.2 60155 d.19.1.1 60156 1kj2H 277 2.22e+01 b.1.1.2 72563 d.19.1.1 72564 1nanH 278 2.23e+01 b.1.1.2 85493 d.19.1.1 85494 1kj3H 279 2.24e+01 b.1.1.2 72569 d.19.1.1 72570 1tc1A 220 2.25e+01 1tc1A c.61.1.1 34083 1tc2A 221 2.25e+01 1tc1A c.61.1.1 34085 1fzkA 274 2.26e+01 1agdA b.1.1.2 60149 d.19.1.1 60150 1jcmP 259 2.29e+01 c.1.2.4 71633 1kjvA 284 2.29e+01 b.1.1.2 77421 d.19.1.1 77422 1hv8A 367 2.39e+01 1hv8A c.37.1.19 32405 c.37.1.19 32406 1s7qA 348 2.51e+01 b.1.1.2 -2613 d.19.1.1 -9368 1o0xA 262 2.54e+01 d.127.1.1 80755 1lekA 274 2.62e+01 b.1.1.2 73872 d.19.1.1 73873 1mwaH 275 2.62e+01 b.1.1.2 79566 d.19.1.1 79567 1l8tA 263 2.64e+01 d.144.1.6 73702 1j7lA 264 2.69e+01 d.144.1.6 62697 1uwcA 261 2.70e+01 c.69.1.17 -8352 1o6dA 163 2.72e+01 c.116.1.3 -6689 1uswA 260 2.72e+01 c.69.1.17 -8351 1uapA 154 2.77e+01 b.40.3.3 88385 1p2fA 220 2.82e+01 a.4.6.1 87720 c.23.1.1 87721 1nltA 248 2.86e+01 b.4.1.1 -2931 b.4.1.1 -2932 g.54.1.1 -12867 1c16A 260 2.86e+01 1agdA b.1.1.2 20856 d.19.1.1 38320 1aazA 87 2.93e+01 1aba c.47.1.1 32761 1h9fA 57 2.94e+01 1h9fA a.140.1.1 60826 1d02A 202 2.95e+01 1d02A c.52.1.8 33313 1cunA 213 2.97e+01 1cunA a.7.1.1 16313 a.7.1.1 16314 1istA 162 2.98e+01 b.62.1.1 -4536 1afwA 393 3.22e+01 1afwA c.95.1.1 35900 c.95.1.1 35901 1it2A 146 3.23e+01 a.1.1.2 66365 1nwmX 142 3.23e+01 a.7.8.1 86301 1pxtA 390 3.27e+01 1afwA c.95.1.1 35904 c.95.1.1 35905 1sdsA 117 3.31e+01 2csmA 256 3.48e+01 5csmA a.130.1.2 19497 1nafA 158 3.53e+01 a.7.8.1 85487 1o3xA 140 3.65e+01 a.7.8.1 86617 1tsx 316 3.74e+01 1bkpA d.117.1.1 41002