# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1r5qA 102 6.73e-04 unknown_sccs -965 1or7A 194 2.95e-02 a.4.13.2 87332 a.177.1.1 87333 1sctB 151 4.59e-02 3sdhA a.1.1.2 15003 1v2zA 111 6.81e-02 3sdhA 146 1.65e-01 3sdhA a.1.1.2 14984 1vom 762 2.60e-01 1lvk b.34.3.1 24577 c.37.1.9 32174 1abv 134 2.82e-01 1abv a.70.1.1 18317 1dvpA 220 3.28e-01 1dvpA a.118.9.2 19216 g.50.1.1 45358 1n5dA 288 4.84e-01 c.2.1.2 80030 1hu4A 288 4.84e-01 1hu4A 1ng6A 148 5.12e-01 a.182.1.1 85670 2sas 185 5.21e-01 2sas a.39.1.5 17258 1hz4A 373 5.39e-01 a.118.8.2 65960 1sxjE 354 6.04e-01 1lvk 762 7.11e-01 1lvk b.34.3.1 24576 c.37.1.9 32173 1hy0A 466 1.18e+00 1auwA a.127.1.1 61392 1s3jA 155 1.27e+00 a.4.5.28 -227 1b0b 142 1.37e+00 2fal a.1.1.2 15010 1na3A 91 1.58e+00 k.38.1.1 85481 1iatA 557 1.71e+00 1dqrA c.80.1.2 62123 1l7mA 211 2.02e+00 c.108.1.4 73664 1fds 327 2.14e+00 1fds c.2.1.2 29838 1lfb 99 2.32e+00 1lfb a.4.1.1 15989 1j97A 211 2.35e+00 1f5sA c.108.1.4 62753 1d0yA 761 2.36e+00 1lvk b.34.3.1 24581 c.37.1.9 32178 1oltA 457 2.50e+00 unknown_sccs -5688 1mi1A 414 2.78e+00 a.169.1.1 79137 b.55.1.6 79138 1ntyA 311 3.04e+00 1o0uA 429 3.20e+00 c.118.1.1 80743 1k8tA 510 3.70e+00 e.41.1.1 68316 1a8o 70 3.71e+00 1a8o a.28.3.1 16953 1jtvA 327 3.83e+00 c.2.1.2 84230 1kkhA 317 3.86e+00 d.14.1.5 72645 d.58.26.3 72646 1on2A 142 4.21e+00 a.4.5.24 87103 a.76.1.1 87104 1g8eA 116 4.33e+00 1g8eA a.145.1.1 60346 1q59A 172 4.51e+00 f.1.4.1 -12062 1r71A 178 4.56e+00 1or0A 160 4.69e+00 d.153.1.2 -11415 1dwkA 156 4.92e+00 1dw9A a.35.1.4 17075 d.72.1.1 39606 5eau 548 4.95e+00 5eat a.102.4.1 18851 a.128.1.3 19443 1fm2A 169 5.27e+00 1fm2A d.153.1.2 59877 1okrA 123 5.69e+00 unknown_sccs -235 1rfzA 168 5.80e+00 unknown_sccs -1206 1i3dA 146 5.92e+00 a.1.1.2 61587 1kiyA 374 6.19e+00 a.128.1.5 72555 1adt 356 6.65e+00 1anv a.54.1.1 17887 g.51.1.1 45362 g.51.1.1 45368 1k30A 368 6.67e+00 c.112.1.1 68067 1cyj 90 6.74e+00 1ctj a.3.1.1 15805 1floA 422 6.88e+00 1floA a.60.9.1 18106 d.163.1.1 42166 1om2A 95 6.89e+00 1om2A a.23.4.1 16520 1iuqA 367 6.95e+00 c.112.1.1 -8440 1kn1A 160 7.10e+00 a.1.1.3 77455 1gv3A 248 7.60e+00 a.2.11.1 70585 d.44.1.1 70586 1lfkA 398 7.80e+00 a.104.1.1 77926 1v9dA 340 8.08e+00 unknown_sccs -1762 1hekA 131 8.18e+00 a.61.1.5 65818 1aj8A 371 8.20e+00 1aj8A a.103.1.1 18900 1ujpA 271 8.29e+00 c.1.2.4 -5177 1eexA 554 8.33e+00 1dioA c.1.19.3 29650 1uedA 406 8.57e+00 a.104.1.1 -1459 1ofcX 304 8.77e+00 a.4.1.3 -195 unknown_sccs -199 unknown_sccs -978 1umdA 367 9.58e+00 c.36.1.11 -6969 1allA 160 9.69e+00 1qgwC a.1.1.3 15647 1anv 356 9.97e+00 1anv a.54.1.1 17890 g.51.1.1 45365 g.51.1.1 45371 1m7sA 484 1.06e+01 e.5.1.1 74574 1qwoA 442 1.08e+01 1qs1A 462 1.10e+01 1qs1A d.166.1.1 42260 d.166.1.1 42261 1p9bA 442 1.16e+01 c.37.1.10 -7115 1v7oA 165 1.17e+01 unknown_sccs -10249 1j09A 468 1.17e+01 a.97.1.1 77025 c.26.1.1 77026 1n3kA 130 1.20e+01 a.77.1.4 79965 1po5A 476 1.21e+01 a.104.1.1 -1467 1h2wA 710 1.22e+01 b.69.7.1 76596 c.69.1.4 76597 1knvA 293 1.25e+01 c.52.1.7 68707 1rfmA 344 1.26e+01 c.122.1.1 -8032 1dar 691 1.27e+01 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1efyA 350 1.30e+01 1a26 a.41.1.1 17413 d.166.1.2 42275 1tlqA 189 1.33e+01 1d9cA 121 1.34e+01 1d9cA a.26.1.3 16901 1g291 372 1.38e+01 1g291 1qfmA 710 1.41e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641 1h8eD 482 1.41e+01 1skyE a.69.1.1 60747 b.49.1.1 60748 c.37.1.11 60749 1on0A 158 1.47e+01 d.108.1.1 87095 1dq3A 454 1.47e+01 1dq3A b.86.1.2 28380 d.50.3.1 38798 d.95.2.2 40585 d.95.2.2 40586 1sr7A 259 1.50e+01 1jrrA 382 1.51e+01 e.1.1.1 63256 1kgnA 329 1.52e+01 a.25.1.2 68584 1em9A 154 1.53e+01 1d1dA a.73.1.1 18333 1hbnA 549 1.53e+01 1mroA a.89.1.1 60898 d.58.31.2 60899 1pv9A 348 1.59e+01 c.55.2.1 -7610 d.127.1.1 -11000 1e3mA 800 1.60e+01 1ewqA a.113.1.1 19075 c.37.1.12 32389 c.55.6.1 33746 d.75.2.1 39747 1mroA 548 1.61e+01 1mroA a.89.1.1 18525 d.58.31.2 39443 1h3nA 878 1.62e+01 a.27.1.1 76641 b.51.1.1 76642 c.26.1.1 76643 1v4xA 144 1.64e+01 1izmA 184 1.66e+01 unknown_sccs -1233 1mgtA 174 1.67e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 4icb 76 1.70e+01 4icb a.39.1.1 17145 1r2rA 248 1.70e+01 c.1.1.1 -5147 1e4iA 447 1.71e+01 1e70M c.1.8.4 59225 1foeA 377 1.71e+01 1foeA a.87.1.1 18517 b.55.1.1 26969 1n1jA 93 1.74e+01 a.22.1.3 79813 1ltlA 279 1.78e+01 b.40.4.11 84701 1brwA 433 1.79e+01 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1iomA 377 1.80e+01 a.103.1.1 83698 1qz4A 213 1.83e+01 unknown_sccs -1227 1uddA 226 1.91e+01 2ak3A 226 1.91e+01 1zin c.37.1.1 31892 g.41.2.1 45193 1aru 344 1.95e+01 1arv a.93.1.1 18589 1np3A 338 1.96e+01 a.100.1.2 85946 c.2.1.6 85947 1q4mA 221 1.96e+01 unknown_sccs -1910 1k8kA 418 1.96e+01 c.55.1.1 68305 c.55.1.1 68306 1dlyA 164 2.01e+01 1dlyA a.1.1.1 14983 1gk9A 260 2.05e+01 d.153.1.2 65246 1f5mA 180 2.06e+01 1f5mB d.110.2.1 40895 2ezh 75 2.09e+01 2ezh a.4.1.2 16029 1mzgA 146 2.11e+01 d.224.1.1 79696 1j5wA 298 2.15e+01 d.104.1.1 71589 1ewqA 765 2.22e+01 1ewqA a.113.1.1 19069 c.37.1.12 32383 c.55.6.1 33740 d.75.2.1 39743 1uurA 473 2.22e+01 a.47.1.1 -968 b.2.5.5 -2904 d.93.1.1 -10632 1n4qB 377 2.24e+01 a.102.4.3 -1424 1ursA 402 2.27e+01 c.94.1.1 -8651 1uf2C 421 2.29e+01 unknown_sccs -1522 b.19.1.1 -3155 1hr6B 443 2.32e+01 1be3A d.185.1.1 61166 d.185.1.1 61167 1bs4A 168 2.33e+01 1bs4A d.167.1.1 42287 1ejxA 100 2.36e+01 d.8.1.1 83182 1qc7A 101 2.36e+01 1qc7A a.118.14.1 18456 1e79D 482 2.37e+01 1skyE a.69.1.1 18272 b.49.1.1 26437 c.37.1.11 32317 1jf2A 195 2.38e+01 1ej3A a.39.1.5 62930 1k7wA 468 2.39e+01 a.127.1.1 72130 1efvA 315 2.42e+01 1efvA c.26.2.3 31633 c.31.1.2 31728 1qv1A 195 2.48e+01 a.39.1.5 -830 1gcuA 295 2.52e+01 1gcuA c.2.1.3 30063 d.81.1.4 39978 1ggzA 148 2.54e+01 a.39.1.5 70176 1n40A 396 2.54e+01 a.104.1.1 79977 1ed1A 135 2.55e+01 1hiwA a.61.1.1 18130 1iwhA 141 2.55e+01 a.1.1.2 76882 1lc0A 294 2.56e+01 c.2.1.3 73823 d.81.1.4 73824 1kv9A 668 2.57e+01 a.3.1.6 73056 b.70.1.1 73057 1q87A 221 2.59e+01 unknown_sccs -12028 1mba 147 2.61e+01 2fal a.1.1.2 15149 1lw1A 177 2.63e+01 a.152.1.1 74290 1v4xB 146 2.67e+01 6paxA 133 2.67e+01 6paxA a.4.1.5 64758 a.4.1.5 64759 3tmkA 216 2.68e+01 3tmkA c.37.1.1 31920 1mx3A 347 2.68e+01 c.2.1.4 79638 c.23.12.1 79639 1irdB 146 2.68e+01 a.1.1.2 66287 1ad2 228 2.75e+01 1ad2 e.24.1.1 43353 1a28A 256 2.80e+01 1a28A a.123.1.1 19290 2occE 109 2.80e+01 2occE a.118.11.1 19224 1szqA 483 2.80e+01 unknown_sccs -11791 1mc0A 368 2.85e+01 d.110.2.1 78937 d.110.2.1 78938 1ex1A 605 2.89e+01 1ex1A c.1.8.7 29013 c.23.11.1 31347 1gu4A 78 2.96e+01 h.1.3.1 83317 1i50K 120 2.98e+01 d.74.3.2 61765 1dciA 275 3.00e+01 1dciA c.14.1.3 30918 1pi1A 185 3.00e+01 unknown_sccs -762 1el4A 195 3.00e+01 1ej3A a.39.1.5 59453 1o1yA 239 3.04e+01 c.23.16.1 86554 1no1A 126 3.08e+01 a.179.1.1 85913 1ucpA 91 3.08e+01 unknown_sccs -1193 1octC 156 3.11e+01 1au7A a.4.1.1 15991 a.35.1.1 17017 1g4yB 101 3.12e+01 1g4yB f.15.1.1 60251 1fjgM 126 3.21e+01 1fjfM a.156.1.1 16293 1yub 245 3.21e+01 2ercA c.66.1.24 34219 1go3F 107 3.21e+01 a.60.8.2 65407 1exrA 148 3.26e+01 1cll a.39.1.5 17299 1q44A 326 3.29e+01 c.37.1.5 -7037 1i0aA 466 3.33e+01 1auwA a.127.1.1 61479 1pou 71 3.35e+01 1au7A a.35.1.1 17020 1b0nA 111 3.36e+01 1b0nA a.34.1.1 17001 a.35.1.3 17064 1mp4A 292 3.41e+01 c.68.1.6 79376 1uroA 367 3.43e+01 1uroA c.1.22.1 29675 1iyrA 111 3.48e+01 a.164.1.1 76973 1cqxA 403 3.56e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1ef8A 261 3.57e+01 1ef8A c.14.1.3 30921 1ryp2 233 3.62e+01 1ryp2 1hh8A 213 3.68e+01 1e96B a.118.8.1 61042 1go4E 100 3.69e+01 h.1.22.1 70296 2mhr 118 3.69e+01 2mhr a.24.4.1 16581 1k8kB 394 3.71e+01 c.55.1.1 68307 1dceA 567 3.81e+01 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1gln 468 3.83e+01 1gln a.97.1.1 18752 c.26.1.1 31588 1r3sA 367 3.86e+01 c.1.22.1 -5648 1m6jA 261 3.86e+01 c.1.1.1 78693 1q48A 134 3.89e+01 unknown_sccs -9776 1rypJ 204 3.91e+01 d.153.1.4 41878 1aky 221 3.96e+01 1zin c.37.1.1 31896 g.41.2.1 45197 1h6kA 757 3.96e+01 unknown_sccs 60675 unknown_sccs 60676 unknown_sccs 60677 1lp8A 254 3.96e+01 d.165.1.1 -11551 1v54E 109 3.97e+01 a.118.11.1 -1652 1io7A 368 3.99e+01 1f4tA a.104.1.1 18971