# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1r5qA 102 1.02e-03 unknown_sccs -965 1v2zA 111 3.38e-02 1kktA 511 8.22e-02 a.102.2.1 68687 1gntA 553 3.42e-01 e.26.1.1 70290 1e2uA 553 3.43e-01 1e1dA e.26.1.1 43362 1fnnA 389 4.32e-01 1fnnA a.4.5.11 16129 c.37.1.20 32426 1sr7A 259 5.47e-01 1s9pA 227 5.59e-01 1a28A 256 6.49e-01 1a28A a.123.1.1 19290 1aj8A 371 7.57e-01 1aj8A a.103.1.1 18900 1qusA 322 8.10e-01 1ltm d.2.1.6 36991 1on0A 158 1.30e+00 d.108.1.1 87095 1ufaA 520 1.38e+00 unknown_sccs -421 unknown_sccs -6065 1sctB 151 1.48e+00 3sdhA a.1.1.2 15003 1ks9A 291 1.77e+00 a.100.1.7 68857 c.2.1.6 68858 1p49A 562 1.77e+00 c.76.1.2 -8432 1hz4A 373 1.87e+00 a.118.8.2 65960 1aru 344 1.90e+00 1arv a.93.1.1 18589 1gwiA 411 2.24e+00 a.104.1.1 76364 1jdhA 529 2.43e+00 a.118.1.1 66549 1mzgA 146 2.57e+00 d.224.1.1 79696 1sxjE 354 2.58e+00 1lycA 343 2.89e+00 a.93.1.1 74344 1cqxA 403 3.05e+00 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1b0b 142 3.12e+00 2fal a.1.1.2 15010 1keaA 221 3.28e+00 a.96.1.2 68491 2mhr 118 3.28e+00 2mhr a.24.4.1 16581 1mhqA 148 3.34e+00 a.118.9.2 84973 1dvpA 220 3.45e+00 1dvpA a.118.9.2 19216 g.50.1.1 45358 1lwdA 413 3.58e+00 c.77.1.1 78265 1hbnA 549 3.90e+00 1mroA a.89.1.1 60898 d.58.31.2 60899 1jvsA 400 4.01e+00 a.69.3.1 77187 c.2.1.3 77188 d.81.1.3 77189 1i7wA 538 4.06e+00 3bct a.118.1.1 61909 1qwoA 442 4.57e+00 1kx5A 135 4.69e+00 a.22.1.1 77593 1v4xA 144 4.79e+00 1csh 435 4.81e+00 1csh a.103.1.1 18880 1fo3A 460 5.16e+00 1dl2A a.102.2.1 18845 1fds 327 5.30e+00 1fds c.2.1.2 29838 1dlyA 164 5.30e+00 1dlyA a.1.1.1 14983 1g2nA 264 5.31e+00 1lbd a.123.1.1 60227 1no4A 97 5.63e+00 h.1.24.1 85918 1mroA 548 5.73e+00 1mroA a.89.1.1 18525 d.58.31.2 39443 1jtvA 327 5.95e+00 c.2.1.2 84230 1kyqA 274 6.21e+00 c.2.1.11 73281 e.37.1.1 73282 1j2jB 45 6.42e+00 a.7.8.1 84017 1mi1A 414 6.52e+00 a.169.1.1 79137 b.55.1.6 79138 1qi9A 556 6.54e+00 1qhbA a.111.1.2 19053 1i27A 73 6.71e+00 1i27A a.4.5.30 61555 1vkeA 133 7.05e+00 1jpzA 473 7.19e+00 a.104.1.1 67069 1dkzA 219 7.33e+00 1dkzA unknown_sccs -445 unknown_sccs -3060 2a0b 125 7.57e+00 2a0b a.24.10.1 16630 1iomA 377 7.61e+00 a.103.1.1 83698 1ca1 370 8.18e+00 1ca1 a.124.1.1 19340 b.12.1.3 23648 1hq3C 136 8.46e+00 1aoiA a.22.1.1 16454 1ujkA 147 8.86e+00 a.118.9.2 -1623 1rfzA 168 8.87e+00 unknown_sccs -1206 1jwgA 147 8.90e+00 a.118.9.2 71911 1ornA 226 9.25e+00 a.96.1.1 87342 1g73A 162 9.29e+00 1fewA a.7.4.1 16332 1vhnA 318 9.71e+00 c.1.4.1 -5209 1b0nB 57 9.84e+00 1b0nB a.34.1.1 17002 1o0uA 429 9.96e+00 c.118.1.1 80743 1nxhA 126 1.05e+01 unknown_sccs -1239 1epwA 1290 1.06e+01 b.29.1.6 24269 b.42.4.2 25614 d.92.1.7 40305 h.4.2.1 45785 1kkhA 317 1.06e+01 d.14.1.5 72645 d.58.26.3 72646 1ofcX 304 1.09e+01 a.4.1.3 -195 unknown_sccs -199 unknown_sccs -978 1ihp 438 1.15e+01 1ihp c.60.1.2 33993 1qv1A 195 1.19e+01 a.39.1.5 -830 1rh5C 53 1.26e+01 unknown_sccs -12204 1fi4A 416 1.32e+01 1fi4A d.14.1.5 59847 d.58.26.2 59848 1m6kA 251 1.35e+01 e.3.1.1 78695 1bgf 124 1.36e+01 1bgf a.90.1.1 18537 1b67A 68 1.36e+01 1a7w a.22.1.2 16474 1dl2A 511 1.50e+01 1dl2A a.102.2.1 18844 8tlnE 316 1.51e+01 1hyt d.92.1.2 59075 1axn 323 1.53e+01 1avc a.65.1.1 18149 1pbwA 216 1.56e+01 1pbwA a.116.1.1 19103 2tmnE 316 1.60e+01 1hyt d.92.1.2 59055 1na3A 91 1.65e+01 k.38.1.1 85481 3sdhA 146 1.66e+01 3sdhA a.1.1.2 14984 1m7vA 363 1.67e+01 d.174.1.1 78748 1reoA 486 1.68e+01 c.3.1.2 -5997 d.16.1.5 -9217 1r71A 178 1.70e+01 1cm5A 759 1.73e+01 1cm5A c.7.1.1 30671 1h16A 759 1.74e+01 c.7.1.1 76462 1qlaC 256 1.76e+01 1qlaC f.21.2.1 43722 1iwhA 141 1.81e+01 a.1.1.2 76882 1qsdA 106 1.83e+01 1qsdA a.7.5.1 16335 1mc0A 368 1.84e+01 d.110.2.1 78937 d.110.2.1 78938 1ee4A 423 1.84e+01 1ee4A a.118.1.1 19128 1no7A 604 1.84e+01 unknown_sccs -12043 1s3jA 155 1.85e+01 a.4.5.28 -227 1kn1A 160 1.88e+01 a.1.1.3 77455 1nnvA 110 1.94e+01 unknown_sccs -9309 1jq5A 370 1.96e+01 e.22.1.2 67084 1eqcA 394 1.99e+01 1cz1A c.1.8.3 28811 1fm2A 169 2.01e+01 1fm2A d.153.1.2 59877 1e5rA 290 2.01e+01 1e5rA b.82.2.4 59276 1el4A 195 2.08e+01 1ej3A a.39.1.5 59453 1mlwA 301 2.12e+01 d.178.1.1 79289 1lfkA 398 2.12e+01 a.104.1.1 77926 1afrA 345 2.15e+01 1afrA a.25.1.2 16805 1iatA 557 2.15e+01 1dqrA c.80.1.2 62123 1oq9A 363 2.16e+01 a.25.1.2 87257 1np3A 338 2.28e+01 a.100.1.2 85946 c.2.1.6 85947 1jf2A 195 2.30e+01 1ej3A a.39.1.5 62930 1s35A 214 2.30e+01 a.7.1.1 -391 a.7.1.1 -392 1srqA 341 2.35e+01 1or0A 160 2.39e+01 d.153.1.2 -11415 1ei1A 391 2.43e+01 1aj6 d.14.1.3 37570 d.122.1.2 41104 1j8mF 297 2.47e+01 1ng1 a.24.13.1 62742 c.37.1.10 62743 1j8yF 297 2.48e+01 1ng1 a.24.13.1 62747 c.37.1.10 62748 1odoA 408 2.48e+01 a.104.1.1 -1463 1n5dA 288 2.48e+01 c.2.1.2 80030 1hu4A 288 2.48e+01 1hu4A 1babA 143 2.54e+01 1abwA a.1.1.2 15235 1g7oA 215 2.59e+01 1g7oA a.45.1.1 60332 c.47.1.5 60333 1uzxA 169 2.64e+01 d.20.1.2 -9409 1mhyB 395 2.65e+01 1mtyB a.25.1.2 16781 1colA 204 2.69e+01 1a87 f.1.1.1 43378 1q74A 303 2.78e+01 unknown_sccs -8121 1a7w 69 2.79e+01 1a7w a.22.1.2 16477 1nuuA 252 2.86e+01 c.26.1.3 86209 1bu7A 455 2.86e+01 1bu7A a.104.1.1 18937 1j7yA 141 2.95e+01 a.1.1.2 66426 1j7lA 264 2.97e+01 d.144.1.6 62697 1j3vA 289 3.03e+01 a.100.1.1 -1303 c.2.1.6 -5947 1fkx 349 3.03e+01 1a4mA c.1.9.1 29018 1q59A 172 3.12e+01 f.1.4.1 -12062 1or7A 194 3.18e+01 a.4.13.2 87332 a.177.1.1 87333 1qz4A 213 3.23e+01 unknown_sccs -1227 1nh1A 330 3.24e+01 unknown_sccs -11798 1nnwA 252 3.26e+01 d.159.1.5 80674 1su4A 994 3.32e+01 b.82.7.1 -4927 c.108.1.7 -6854 d.220.1.1 -11668 f.33.1.1 -12333 1ewqA 765 3.33e+01 1ewqA a.113.1.1 19069 c.37.1.12 32383 c.55.6.1 33740 d.75.2.1 39743 1kf6D 119 3.34e+01 f.21.2.2 72400 1f8rA 498 3.42e+01 1f8rA c.3.1.2 30410 d.16.1.5 37974 1r6fA 310 3.44e+01 unknown_sccs -11804 1io1A 398 3.59e+01 1io1A e.32.1.1 62611 1a4mA 349 3.60e+01 1a4mA c.1.9.1 29014 1ng6A 148 3.74e+01 a.182.1.1 85670 1ax8 146 3.74e+01 1ax8 a.26.1.1 16844 1ekeA 230 3.79e+01 1ekeA c.55.3.1 33572 1k47A 337 3.82e+01 d.14.1.5 72040 d.58.26.4 72041 1opjA 293 3.82e+01 d.144.1.7 87230 2ran 316 3.94e+01 1avc a.65.1.1 18170 1gcuA 295 3.99e+01 1gcuA c.2.1.3 30063 d.81.1.4 39978 1exrA 148 3.99e+01 1cll a.39.1.5 17299