# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1r5qA 102 2.21e-03 unknown_sccs -965 1v2zA 111 2.49e-02 1kktA 511 5.16e-01 a.102.2.1 68687 1e2uA 553 7.22e-01 1e1dA e.26.1.1 43362 1gntA 553 7.22e-01 e.26.1.1 70290 1dvpA 220 9.93e-01 1dvpA a.118.9.2 19216 g.50.1.1 45358 1fnnA 389 1.25e+00 1fnnA a.4.5.11 16129 c.37.1.20 32426 1gwiA 411 1.68e+00 a.104.1.1 76364 1a8h 500 2.10e+00 1a8h a.27.1.1 16922 c.26.1.1 31589 1ufaA 520 2.16e+00 unknown_sccs -421 unknown_sccs -6065 1hbnA 549 2.38e+00 1mroA a.89.1.1 60898 d.58.31.2 60899 1mroA 548 2.38e+00 1mroA a.89.1.1 18525 d.58.31.2 39443 1b0b 142 2.62e+00 2fal a.1.1.2 15010 1p49A 562 2.70e+00 c.76.1.2 -8432 1hz4A 373 2.89e+00 a.118.8.2 65960 1s9pA 227 3.58e+00 1iomA 377 3.75e+00 a.103.1.1 83698 1j8mF 297 4.07e+00 1ng1 a.24.13.1 62742 c.37.1.10 62743 1j8yF 297 4.10e+00 1ng1 a.24.13.1 62747 c.37.1.10 62748 1sxjE 354 4.10e+00 1lwdA 413 5.27e+00 c.77.1.1 78265 1dlyA 164 5.29e+00 1dlyA a.1.1.1 14983 1iatA 557 5.53e+00 1dqrA c.80.1.2 62123 1fo3A 460 5.61e+00 1dl2A a.102.2.1 18845 1aj8A 371 5.92e+00 1aj8A a.103.1.1 18900 1ay7B 89 6.13e+00 1ay7B c.9.1.1 30836 1qusA 322 6.96e+00 1ltm d.2.1.6 36991 1sr7A 259 7.05e+00 1j7lA 264 7.51e+00 d.144.1.6 62697 1on0A 158 7.72e+00 d.108.1.1 87095 1ks9A 291 8.29e+00 a.100.1.7 68857 c.2.1.6 68858 1csh 435 8.52e+00 1csh a.103.1.1 18880 1dceA 567 8.75e+00 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1ho8A 480 8.83e+00 1ho8A a.118.1.9 61107 1mzgA 146 8.94e+00 d.224.1.1 79696 1a28A 256 9.17e+00 1a28A a.123.1.1 19290 1mi1A 414 9.84e+00 a.169.1.1 79137 b.55.1.6 79138 1dl2A 511 1.02e+01 1dl2A a.102.2.1 18844 1e5rA 290 1.02e+01 1e5rA b.82.2.4 59276 1o17A 345 1.08e+01 a.46.2.1 80765 c.27.1.1 80766 1kw4A 89 1.13e+01 a.60.1.2 73077 1no4A 97 1.14e+01 h.1.24.1 85918 1fds 327 1.23e+01 1fds c.2.1.2 29838 1qi9A 556 1.26e+01 1qhbA a.111.1.2 19053 1fkqA 124 1.36e+01 3lzt d.2.1.2 36601 1isiA 265 1.41e+01 e.4.1.1 71394 1axn 323 1.46e+01 1avc a.65.1.1 18149 1jtvA 327 1.49e+01 c.2.1.2 84230 1hu4A 288 1.57e+01 1hu4A 1n5dA 288 1.57e+01 c.2.1.2 80030 1hq3D 103 1.65e+01 1aoiB a.22.1.1 16464 1fm2A 169 1.83e+01 1fm2A d.153.1.2 59877 1mhqA 148 1.94e+01 a.118.9.2 84973 1ihp 438 1.95e+01 1ihp c.60.1.2 33993 1a6q 382 1.95e+01 1a6q a.159.1.1 75801 d.219.1.1 75802 1kkhA 317 1.97e+01 d.14.1.5 72645 d.58.26.3 72646 1qgrA 876 1.97e+01 1qgrA a.118.1.1 19119 1b0nB 57 1.97e+01 1b0nB a.34.1.1 17002 1hcuA 503 2.01e+01 a.102.2.1 65796 1rh5C 53 2.07e+01 unknown_sccs -12204 1oq9A 363 2.08e+01 a.25.1.2 87257 2mhr 118 2.09e+01 2mhr a.24.4.1 16581 1qc7A 101 2.09e+01 1qc7A a.118.14.1 18456 1jpzA 473 2.12e+01 a.104.1.1 67069 1cqxA 403 2.12e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1kx5A 135 2.18e+01 a.22.1.1 77593 1or0A 160 2.19e+01 d.153.1.2 -11415 1j2jB 45 2.25e+01 a.7.8.1 84017 1aru 344 2.26e+01 1arv a.93.1.1 18589 1o0uA 429 2.28e+01 c.118.1.1 80743 1jvsA 400 2.30e+01 a.69.3.1 77187 c.2.1.3 77188 d.81.1.3 77189 1j33A 335 2.31e+01 c.39.1.1 77069 1nogA 177 2.38e+01 a.25.2.2 85923 1keaA 221 2.43e+01 a.96.1.2 68491 1srqA 341 2.48e+01 1a4mA 349 2.49e+01 1a4mA c.1.9.1 29014 1nnwA 252 2.51e+01 d.159.1.5 80674 1qwoA 442 2.58e+01 1lycA 343 2.62e+01 a.93.1.1 74344 2tmnE 316 2.62e+01 1hyt d.92.1.2 59055 1s35A 214 2.66e+01 a.7.1.1 -391 a.7.1.1 -392 8tlnE 316 2.71e+01 1hyt d.92.1.2 59075 1i27A 73 2.74e+01 1i27A a.4.5.30 61555 1rw2A 152 2.76e+01 unknown_sccs -1645 1b67A 68 2.76e+01 1a7w a.22.1.2 16474 1kn1A 160 2.79e+01 a.1.1.3 77455 1dqsA 393 2.80e+01 1dqsA e.22.1.1 43347 1omwA 689 2.83e+01 a.91.1.1 87086 b.55.1.1 87087 d.144.1.7 87088 1kpsB 171 2.85e+01 a.118.12.1 68787 1kyqA 274 2.87e+01 c.2.1.11 73281 e.37.1.1 73282 1fkx 349 2.94e+01 1a4mA c.1.9.1 29018 1ornA 226 3.03e+01 a.96.1.1 87342 1bu7A 455 3.25e+01 1bu7A a.104.1.1 18937 1qpcA 279 3.32e+01 1fgkA d.144.1.7 41685 1ny6A 267 3.57e+01 c.37.1.20 -7221 1kl1A 419 3.64e+01 c.67.1.4 72663 3tmkA 216 3.66e+01 3tmkA c.37.1.1 31920 1ps1A 337 3.66e+01 1ps1A a.128.1.4 19450 1qpaA 345 3.70e+01 1arv a.93.1.1 18585 1kx5B 102 3.77e+01 a.22.1.1 77594 1bjt 793 3.78e+01 1bjt e.11.1.1 43249 3sdhA 146 3.83e+01 3sdhA a.1.1.2 14984 1ursA 402 3.87e+01 c.94.1.1 -8651 1e4iA 447 3.95e+01 1e70M c.1.8.4 59225 1g73A 162 3.98e+01 1fewA a.7.4.1 16332 1ofcX 304 3.99e+01 a.4.1.3 -195 unknown_sccs -199 unknown_sccs -978