# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1r5qA 102 6.97e-05 unknown_sccs -965 1v2zA 111 5.87e-04 1kktA 511 2.65e-02 a.102.2.1 68687 1gntA 553 8.22e-02 e.26.1.1 70290 1e2uA 553 8.22e-02 1e1dA e.26.1.1 43362 1tlqA 189 1.10e-01 1aj8A 371 1.75e-01 1aj8A a.103.1.1 18900 1sxjE 354 2.01e-01 1cqxA 403 2.50e-01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1qusA 322 3.03e-01 1ltm d.2.1.6 36991 1ay7B 89 3.16e-01 1ay7B c.9.1.1 30836 1j8mF 297 3.31e-01 1ng1 a.24.13.1 62742 c.37.1.10 62743 1j8yF 297 3.33e-01 1ng1 a.24.13.1 62747 c.37.1.10 62748 1dlyA 164 4.43e-01 1dlyA a.1.1.1 14983 1dvpA 220 4.44e-01 1dvpA a.118.9.2 19216 g.50.1.1 45358 1iomA 377 5.31e-01 a.103.1.1 83698 1lwdA 413 5.39e-01 c.77.1.1 78265 1on0A 158 5.61e-01 d.108.1.1 87095 1hbnA 549 6.65e-01 1mroA a.89.1.1 60898 d.58.31.2 60899 1fnnA 389 6.99e-01 1fnnA a.4.5.11 16129 c.37.1.20 32426 1gwiA 411 7.13e-01 a.104.1.1 76364 1mroA 548 7.65e-01 1mroA a.89.1.1 18525 d.58.31.2 39443 1hz4A 373 8.72e-01 a.118.8.2 65960 1sctB 151 8.78e-01 3sdhA a.1.1.2 15003 1s9pA 227 1.00e+00 1p49A 562 1.12e+00 c.76.1.2 -8432 1or7A 194 1.14e+00 a.4.13.2 87332 a.177.1.1 87333 3sdhA 146 1.21e+00 3sdhA a.1.1.2 14984 1dceA 567 1.45e+00 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1b0b 142 1.47e+00 2fal a.1.1.2 15010 1iatA 557 1.52e+00 1dqrA c.80.1.2 62123 1j7lA 264 1.70e+00 d.144.1.6 62697 1ufaA 520 1.80e+00 unknown_sccs -421 unknown_sccs -6065 1keaA 221 1.80e+00 a.96.1.2 68491 1l7mA 211 1.91e+00 c.108.1.4 73664 1j97A 211 1.91e+00 1f5sA c.108.1.4 62753 1fo3A 460 1.92e+00 1dl2A a.102.2.1 18845 1mzgA 146 1.97e+00 d.224.1.1 79696 1sr7A 259 2.08e+00 1rkeA 262 2.53e+00 a.24.9.1 -582 a.24.9.1 -583 1g2nA 264 2.62e+00 1lbd a.123.1.1 60227 1e5rA 290 2.69e+00 1e5rA b.82.2.4 59276 1o17A 345 2.75e+00 a.46.2.1 80765 c.27.1.1 80766 1np3A 338 2.87e+00 a.100.1.2 85946 c.2.1.6 85947 1o0uA 429 2.94e+00 c.118.1.1 80743 1a8h 500 3.06e+00 1a8h a.27.1.1 16922 c.26.1.1 31589 1a28A 256 3.16e+00 1a28A a.123.1.1 19290 1hy0A 466 3.18e+00 1auwA a.127.1.1 61392 1jvsA 400 3.18e+00 a.69.3.1 77187 c.2.1.3 77188 d.81.1.3 77189 1dl2A 511 3.20e+00 1dl2A a.102.2.1 18844 1n3kA 130 3.27e+00 a.77.1.4 79965 1aru 344 3.31e+00 1arv a.93.1.1 18589 1ornA 226 3.49e+00 a.96.1.1 87342 1kx5A 135 3.55e+00 a.22.1.1 77593 1b0nB 57 3.55e+00 1b0nB a.34.1.1 17002 1vkeA 133 3.65e+00 1ofcX 304 3.81e+00 a.4.1.3 -195 unknown_sccs -199 unknown_sccs -978 1no4A 97 3.86e+00 h.1.24.1 85918 1lycA 343 4.22e+00 a.93.1.1 74344 1kl1A 419 4.85e+00 c.67.1.4 72663 3tmkA 216 4.95e+00 3tmkA c.37.1.1 31920 1qc7A 101 5.33e+00 1qc7A a.118.14.1 18456 2a0b 125 5.38e+00 2a0b a.24.10.1 16630 1pbwA 216 5.57e+00 1pbwA a.116.1.1 19103 1jq5A 370 5.63e+00 e.22.1.2 67084 1hq3C 136 5.68e+00 1aoiA a.22.1.1 16454 1hu4A 288 5.92e+00 1hu4A 1n5dA 288 5.92e+00 c.2.1.2 80030 1n2aA 201 6.04e+00 a.45.1.1 -938 c.47.1.5 -7463 1hcuA 503 6.05e+00 a.102.2.1 65796 1csh 435 6.29e+00 1csh a.103.1.1 18880 1g73A 162 6.44e+00 1fewA a.7.4.1 16332 1dar 691 6.47e+00 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1epwA 1290 6.47e+00 b.29.1.6 24269 b.42.4.2 25614 d.92.1.7 40305 h.4.2.1 45785 1kbjA 412 6.52e+00 c.1.4.1 72280 1rh5A 436 6.59e+00 unknown_sccs -12298 1qjbA 245 6.77e+00 1qjaA a.118.7.1 19202 1qpaA 345 7.20e+00 1arv a.93.1.1 18585 1q59A 172 7.34e+00 f.1.4.1 -12062 5eau 548 7.74e+00 5eat a.102.4.1 18851 a.128.1.3 19443 1on2A 142 8.02e+00 a.4.5.24 87103 a.76.1.1 87104 1j2jB 45 8.06e+00 a.7.8.1 84017 1fds 327 8.12e+00 1fds c.2.1.2 29838 1a8o 70 8.27e+00 1a8o a.28.3.1 16953 1i27A 73 8.45e+00 1i27A a.4.5.30 61555 1jtvA 327 8.47e+00 c.2.1.2 84230 1r71A 178 8.51e+00 1m7vA 363 8.51e+00 d.174.1.1 78748 1s3jA 155 8.81e+00 a.4.5.28 -227 1omwA 689 8.84e+00 a.91.1.1 87086 b.55.1.1 87087 d.144.1.7 87088 1ohuA 175 9.20e+00 f.1.4.1 -12058 1pw4A 451 9.48e+00 unknown_sccs -12259 1mlwA 301 9.80e+00 d.178.1.1 79289 1qwoA 442 9.97e+00 1na3A 91 1.01e+01 k.38.1.1 85481 1j3vA 289 1.03e+01 a.100.1.1 -1303 c.2.1.6 -5947 1nogA 177 1.06e+01 a.25.2.2 85923 1k3pA 426 1.08e+01 a.103.1.1 77237 1kkhA 317 1.11e+01 d.14.1.5 72645 d.58.26.3 72646 1mhqA 148 1.14e+01 a.118.9.2 84973 1axn 323 1.14e+01 1avc a.65.1.1 18149 1spgA 144 1.15e+01 1abwA a.1.1.2 15409 1ursA 402 1.17e+01 c.94.1.1 -8651 1d9cA 121 1.18e+01 1d9cA a.26.1.3 16901 1rw2A 152 1.21e+01 unknown_sccs -1645 1ei1A 391 1.24e+01 1aj6 d.14.1.3 37570 d.122.1.2 41104 1qcwA 410 1.25e+01 1gox c.1.4.1 28622 1srqA 341 1.26e+01 1rfzA 168 1.27e+01 unknown_sccs -1206 1ax4A 467 1.27e+01 1ax4A c.67.1.2 34391 1k7wA 468 1.31e+01 a.127.1.1 72130 1owcA 427 1.32e+01 1aep 161 1.33e+01 1aep a.63.1.1 18139 1colA 204 1.33e+01 1a87 f.1.1.1 43378 1e4iA 447 1.36e+01 1e70M c.1.8.4 59225 1i7wA 538 1.46e+01 3bct a.118.1.1 61909 1ng6A 148 1.47e+01 a.182.1.1 85670 1oq9A 363 1.49e+01 a.25.1.2 87257 1a6q 382 1.49e+01 1a6q a.159.1.1 75801 d.219.1.1 75802 1sedA 117 1.49e+01 1ihp 438 1.53e+01 1ihp c.60.1.2 33993 1oeqA 418 1.53e+01 1ek4A 418 1.54e+01 1dd8A c.95.1.1 59436 c.95.1.1 59437 1ikpA 613 1.56e+01 b.29.1.7 66182 d.166.1.1 66183 f.1.5.1 66184 1qsdA 106 1.59e+01 1qsdA a.7.5.1 16335 1s35A 214 1.62e+01 a.7.1.1 -391 a.7.1.1 -392 1jwgA 147 1.63e+01 a.118.9.2 71911 1ujkA 147 1.63e+01 a.118.9.2 -1623 1mi1A 414 1.72e+01 a.169.1.1 79137 b.55.1.6 79138 1miwA 404 1.80e+01 a.173.1.1 79162 d.218.1.4 79163 1llp 343 1.83e+01 1arv a.93.1.1 18578 1kn1A 160 1.84e+01 a.1.1.3 77455 1fs7A 485 1.84e+01 1qdbA a.138.1.3 19691 1ofdA 1520 1.89e+01 b.80.4.1 86935 c.1.4.1 86936 d.153.1.1 86937 1kw4A 89 1.90e+01 a.60.1.2 73077 1qs1A 462 2.00e+01 1qs1A d.166.1.1 42260 d.166.1.1 42261 1q4mA 221 2.02e+01 unknown_sccs -1910 1uddA 226 2.02e+01 1eu8A 409 2.07e+01 1eu8A c.94.1.1 59502 1m33A 258 2.08e+01 c.69.1.26 78514 1h6pA 203 2.11e+01 a.146.1.1 60690 1go3F 107 2.16e+01 a.60.8.2 65407 1j33A 335 2.21e+01 c.39.1.1 77069 1dkzA 219 2.23e+01 1dkzA unknown_sccs -445 unknown_sccs -3060 1afrA 345 2.28e+01 1afrA a.25.1.2 16805 1kyqA 274 2.29e+01 c.2.1.11 73281 e.37.1.1 73282 1khdA 345 2.31e+01 a.46.2.1 77400 c.27.1.1 77401 1dseA 292 2.32e+01 1ryc a.93.1.1 59130 1dxrM 323 2.33e+01 6prcM f.26.1.1 43432 1nm8A 616 2.35e+01 c.43.1.3 85872 c.43.1.3 85873 1r9dA 787 2.38e+01 1rh5C 53 2.41e+01 unknown_sccs -12204 1dzkA 157 2.44e+01 1obpA b.60.1.1 27096 1qhtA 775 2.48e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1gv3A 248 2.54e+01 a.2.11.1 70585 d.44.1.1 70586 1n4qB 377 2.54e+01 a.102.4.3 -1424 1kb9A 431 2.54e+01 d.185.1.1 77311 d.185.1.1 77312 2vhbA 146 2.56e+01 2vhbA a.1.1.2 15629 1ezvA 430 2.61e+01 1be3A d.185.1.1 59541 d.185.1.1 59542 1dvkA 173 2.63e+01 1dvkA a.72.1.1 18319 1ps1A 337 2.65e+01 1ps1A a.128.1.4 19450 1k1vA 41 2.68e+01 a.37.1.1 71999 1lxa 262 2.69e+01 1lxa b.81.1.1 28052 2occE 109 2.71e+01 2occE a.118.11.1 19224 1ca1 370 2.74e+01 1ca1 a.124.1.1 19340 b.12.1.3 23648 1v7oA 165 2.76e+01 unknown_sccs -10249 1j09A 468 2.84e+01 a.97.1.1 77025 c.26.1.1 77026 1lfb 99 2.87e+01 1lfb a.4.1.1 15989 2mhr 118 2.90e+01 2mhr a.24.4.1 16581 1qgrA 876 2.90e+01 1qgrA a.118.1.1 19119 1a4mA 349 2.91e+01 1a4mA c.1.9.1 29014 1cnzA 363 2.92e+01 1cnzA c.77.1.1 35061 1fs1B 141 2.96e+01 1vcbB a.157.1.1 19252 d.42.1.1 38664 1dpsA 167 2.97e+01 1dpsA a.25.1.1 16716 1omrA 201 3.10e+01 a.39.1.5 -854 1jdhA 529 3.14e+01 a.118.1.1 66549 1fkx 349 3.18e+01 1a4mA c.1.9.1 29018 1ks9A 291 3.20e+01 a.100.1.7 68857 c.2.1.6 68858 1kiyA 374 3.20e+01 a.128.1.5 72555 1nnwA 252 3.20e+01 d.159.1.5 80674 1dik 874 3.23e+01 1dik c.1.12.2 29304 c.8.1.1 30702 d.142.1.5 41572 1nvpB 57 3.26e+01 a.32.1.1 -779 1qpcA 279 3.27e+01 1fgkA d.144.1.7 41685 1ho8A 480 3.35e+01 1ho8A a.118.1.9 61107 1hq3D 103 3.37e+01 1aoiB a.22.1.1 16464 1o08A 221 3.44e+01 c.108.1.6 86525 1amuA 563 3.48e+01 1amuA e.23.1.1 43351 1allA 160 3.55e+01 1qgwC a.1.1.3 15647 1ic8A 194 3.55e+01 a.4.1.1 76740 a.35.1.1 76741 1m6kA 251 3.56e+01 e.3.1.1 78695 1dqsA 393 3.57e+01 1dqsA e.22.1.1 43347 1ukfA 188 3.59e+01 unknown_sccs -8886 1hr6A 475 3.60e+01 1hr6A d.185.1.1 61164 d.185.1.1 61165 1vjuA 309 3.61e+01 unknown_sccs -9594 1odoA 408 3.64e+01 a.104.1.1 -1463 1v54E 109 3.66e+01 a.118.11.1 -1652 1nxhA 126 3.74e+01 unknown_sccs -1239 1gln 468 3.75e+01 1gln a.97.1.1 18752 c.26.1.1 31588 1or0A 160 3.77e+01 d.153.1.2 -11415 1em9A 154 3.78e+01 1d1dA a.73.1.1 18333 1fm2A 169 3.79e+01 1fm2A d.153.1.2 59877 1ee4A 423 3.80e+01 1ee4A a.118.1.1 19128 1gox 370 3.84e+01 1gox c.1.4.1 28607 1mijA 152 3.88e+01 a.4.1.1 79150 1jdpA 441 3.96e+01 c.93.1.1 62906 1vkmA 297 3.99e+01