# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1r5qA	102	1.25e-03		unknown_sccs	-965
1v2zA	111	2.51e-01			
1hy0A	466	2.01e+00	1auwA	a.127.1.1	61392
19hcA	292	3.52e+00	19hcA	a.138.1.1	19668
1kjvA	284	4.16e+00		b.1.1.2	77421
				d.19.1.1	77422
1otvA	259	4.19e+00		unknown_sccs	-1915
1g2qA	187	4.47e+00		c.61.1.1	65117
1dbfA	127	5.17e+00	2chsA	d.79.1.2	39761
1mi1A	414	5.74e+00		a.169.1.1	79137
				b.55.1.6	79138
1dvpA	220	6.37e+00	1dvpA	a.118.9.2	19216
				g.50.1.1	45358
1omwA	689	7.45e+00		a.91.1.1	87086
				b.55.1.1	87087
				d.144.1.7	87088
1k7wA	468	8.49e+00		a.127.1.1	72130
1i4dA	224	9.27e+00		h.4.7.1	61682
1lk2A	274	9.82e+00		b.1.1.2	-2610
				d.19.1.1	-9365
1i45A	248	9.89e+00	1amk	c.1.1.1	61665
1tq8A	163	1.06e+01			
1soxA	466	1.09e+01	1soxA	b.1.18.6	21947
				d.120.1.1	41090
				d.176.1.1	42563
1j7lA	264	1.42e+01		d.144.1.6	62697
1it2A	146	1.47e+01		a.1.1.2	66365
1m4lA	307	1.61e+01		c.56.5.1	78604
1neyA	247	1.67e+01		c.1.1.1	80449
2ctc	307	1.70e+01	1aye	c.56.5.1	33802
1b00A	127	1.71e+01	3chy	c.23.1.1	31122
1fjgM	126	1.82e+01	1fjfM	a.156.1.1	16293
1nyhA	166	1.86e+01		h.1.23.1	86403
1fzoA	274	1.87e+01	1agdA	b.1.1.2	60155
				d.19.1.1	60156
1d9cA	121	1.94e+01	1d9cA	a.26.1.3	16901
1r2rA	248	1.94e+01		c.1.1.1	-5147
1q9jA	422	2.02e+01			
1ofwA	296	2.09e+01		a.138.1.1	-2035
1dlyA	164	2.13e+01	1dlyA	a.1.1.1	14983
1ii7A	333	2.21e+01	1ii7A	d.159.1.4	62415
2sas	185	2.24e+01	2sas	a.39.1.5	17258
1ngvA	534	2.59e+01		c.111.1.2	85698
1hz4A	373	2.70e+01		a.118.8.2	65960
1mslA	109	2.83e+01	1mslA	f.16.1.1	43660
1qlaC	256	2.85e+01	1qlaC	f.21.2.1	43722
1vfrA	218	2.86e+01	1vfrA	d.90.1.1	40247
1n5dA	288	2.90e+01		c.2.1.2	80030
1lmeA	176	2.91e+01		d.167.1.1	84629
1hu4A	288	2.92e+01	1hu4A		
1fxxA	482	2.96e+01	1fxxA	c.55.3.5	33726
1pf5A	131	3.12e+01		d.79.1.1	-10368
1opjA	293	3.25e+01		d.144.1.7	87230
1pbwA	216	3.37e+01	1pbwA	a.116.1.1	19103
1i0aA	466	3.38e+01	1auwA	a.127.1.1	61479
1o08A	221	3.42e+01		c.108.1.6	86525
1fkx	349	3.63e+01	1a4mA	c.1.9.1	29018
1mai	131	3.68e+01	1mai	b.55.1.1	26951
1j55A	95	3.68e+01		a.39.1.2	77078
1mroC	247	3.85e+01	1mroC	d.58.31.1	39437
1sctB	151	3.91e+01	3sdhA	a.1.1.2	15003
1h6zA	913	3.93e+01		c.1.12.2	70906
				c.8.1.1	70907
				d.142.1.5	70908
1kktA	511	3.97e+01		a.102.2.1	68687