Best Alignments for T0235

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1nb8A/T0235-1nb8A-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1nb8A/T0235-1nb8A-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.3035e-489.0640e-65 d.3.1.9
1ogwA/T0235-1ogwA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1ogwA/T0235-1ogwA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 6.1305e-024.5125e-04 d.15.1.1
1ubq/T0235-1ubq-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1ubq/T0235-1ubq-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 6.4320e-024.2145e-04 1ubi d.15.1.1
1v86A/T0235-1v86A-t04-local-adpstyle5.a2m 1v86A/T0235-1v86A-t04-local-adpstyle5.al 1.2679e+005.7732e-01
1v5tA/T0235-1v5tA-t04-local-adpstyle1.a2m 1v5tA/T0235-1v5tA-t04-local-adpstyle1.al 1.7444e+006.1653e-01

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001