# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nb8A 353 2.73e-57 d.3.1.9 80385 1ogwA 76 1.50e-03 d.15.1.1 87001 1ubi 76 1.50e-03 1ubi d.15.1.1 37584 1vcbA 118 1.98e-02 1vcbA d.15.1.1 37603 1bt0A 76 2.06e-02 1ubi d.15.1.1 37607 1lm8B 118 3.09e-02 d.15.1.1 74033 1nddA 76 6.67e-02 1ubi d.15.1.1 37599 1hleA 345 1.04e-01 1ovaA e.1.1.1 42618 1rpa 342 2.06e-01 1cviA c.60.1.2 33983 1kz7A 353 6.91e-01 a.87.1.1 73333 b.55.1.1 73334 1ovaA 386 7.05e-01 1ovaA e.1.1.1 42619 1uhgA 385 7.76e-01 e.1.1.1 88491 1rwzA 245 1.03e+00 d.131.1.2 -11106 d.131.1.2 -11107 1uq5A 263 1.22e+00 d.165.1.1 -11555 1nw3A 416 1.28e+00 c.66.1.31 86288 1dbhA 354 1.54e+00 1awe a.87.1.1 18514 b.55.1.1 26967 1hkfA 122 1.73e+00 b.1.1.1 83553 1egaA 301 1.97e+00 1egaA c.37.1.8 32150 d.52.3.1 38836 1lj5A 379 2.18e+00 e.1.1.1 73928 1euvB 86 2.31e+00 1a5r d.15.1.1 37598 1jqnA 883 2.57e+00 c.1.12.3 77159 1fiy 883 2.58e+00 1fiy c.1.12.3 29307 1exrA 148 2.67e+00 1cll a.39.1.5 17299 1a7cA 379 2.92e+00 1sek e.1.1.1 42660 1qmyA 167 3.54e+00 1qmyA d.3.1.2 37094 1jrrA 382 3.65e+00 e.1.1.1 63256 1fnnA 389 3.74e+00 1fnnA a.4.5.11 16129 c.37.1.20 32426 1eg9B 194 3.76e+00 1ndoB d.17.4.4 38120 1d0cA 444 3.79e+00 d.174.1.1 64769 4pah 308 3.88e+00 4pah d.178.1.1 42576 1o7nB 194 4.02e+00 d.17.4.4 81164 1ift 263 4.03e+00 1mrj d.165.1.1 42211 1ut0A 190 4.14e+00 1scfA 273 4.14e+00 1exzA a.26.1.2 16873 1k6kA 143 4.17e+00 a.174.1.1 77274 1d1vA 444 4.28e+00 1nseA d.174.1.1 59101 1ltlA 279 4.53e+00 b.40.4.11 84701 1g5hA 454 4.95e+00 1g5hA c.51.1.1 60270 d.104.1.1 60271 2hpaA 342 5.18e+00 1cviA c.60.1.2 33985 1qpaA 345 5.32e+00 1arv a.93.1.1 18585 1rvgA 305 5.69e+00 c.1.10.2 -5500 1lfdA 87 5.70e+00 1lfdA d.15.1.5 37622 1oglA 283 5.70e+00 unknown_sccs -1512 1f2rI 100 5.90e+00 1c9fA d.15.2.1 37641 1cqxA 403 6.47e+00 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1gg3A 279 6.61e+00 1ef1A a.11.2.1 16372 b.55.1.5 27007 d.15.1.4 37615 1t0yA 122 6.86e+00 d.15.1.1 -9151 1j8uA 325 6.98e+00 d.178.1.1 71611 1ggzA 148 7.00e+00 a.39.1.5 70176 1ed5A 444 7.13e+00 1nseA d.174.1.1 42530 1f83A 425 7.85e+00 1f82A d.92.1.7 40306 1avsA 90 8.16e+00 1cll a.39.1.5 17226 1kk1A 410 8.65e+00 b.43.3.1 72634 b.44.1.1 72635 c.37.1.8 72636 1r0wA 286 8.74e+00 c.37.1.12 -7158 1mrj 247 9.73e+00 1mrj d.165.1.1 42177 1foeA 377 1.01e+01 1foeA a.87.1.1 18517 b.55.1.1 26969 1ig8A 486 1.05e+01 2yhx c.55.1.3 64746 c.55.1.3 64747 1qwyA 291 1.07e+01 unknown_sccs -5023 1spxA 278 1.16e+01 c.2.1.2 -5870 1i5pA 633 1.18e+01 1i5pA b.18.1.3 61817 b.77.2.1 61818 f.1.3.1 61819 1mtpA 323 1.23e+01 e.1.1.1 85107 1nd6A 354 1.23e+01 c.60.1.2 80407 1v2yA 105 1.30e+01 d.15.1.1 -9148 1itg 166 1.33e+01 1b9dA c.55.3.2 33661 1qxfA 66 1.39e+01 g.41.8.4 -12822 1dixA 208 1.42e+01 1bk7A d.124.1.1 41122 1mu5A 471 1.55e+01 a.156.1.3 79472 d.14.1.3 79473 d.122.1.2 79474 1k5nA 276 1.59e+01 b.1.1.2 77266 d.19.1.1 77267 1q1aA 289 1.66e+01 c.31.1.5 -6781 1mijA 152 1.66e+01 a.4.1.1 79150 1nzjA 298 1.69e+01 c.26.1.1 -6600 1s6cA 183 1.74e+01 a.39.1.5 -858 1jmtA 104 1.83e+01 d.58.7.3 63180 1k3xA 262 1.88e+01 a.156.1.2 77242 b.113.1.1 77243 g.39.1.8 77244 1s8iA 121 1.90e+01 a.133.1.2 -1968 1id0A 152 2.17e+01 d.122.1.3 66111 1eg3A 261 2.19e+01 1eg3A a.39.1.7 17376 a.39.1.7 17377 b.72.1.1 27805 1vjoA 393 2.22e+01 c.67.1.3 -8173 1psrA 100 2.29e+01 1psrA a.39.1.2 17180 1l9hA 349 2.29e+01 f.13.1.2 73720 1hzxA 349 2.34e+01 1f88A f.13.1.2 61466 1ppa 121 2.39e+01 1poa a.133.1.2 19550 1cjbA 231 2.42e+01 1qk3A c.61.1.1 34079 1a32 88 2.43e+01 1a32 a.16.1.2 16384 1mzbA 136 2.44e+01 unknown_sccs -266 1qb2A 109 2.52e+01 1qb2A a.36.1.1 17125 1t2aA 375 2.53e+01 c.2.1.2 -5764 1cmiA 85 2.54e+01 1cmiA d.39.1.1 38551 1v2dA 381 2.56e+01 1sczA 233 2.56e+01 c.43.1.1 -7326 1fvuB 125 2.80e+01 1ixxB d.169.1.1 42346 1bq9A 54 2.82e+01 1rb9 g.41.5.1 45238 1d3yA 301 2.84e+01 1d3yA e.12.1.1 43252 1hyeA 313 2.86e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1mg7A 417 2.86e+01 d.14.1.6 84954 d.58.26.6 84955 1f0jA 377 2.94e+01 1f0jA a.125.1.1 19346 1brfA 53 2.98e+01 1rb9 g.41.5.1 45236 1sgvA 316 3.05e+01 b.122.1.1 -5120 unknown_sccs -10148 1gteA 1025 3.07e+01 a.1.2.2 70440 c.1.4.1 70441 c.3.1.1 70442 c.4.1.1 70443 d.58.1.5 70444 1j1vA 94 3.28e+01 a.4.12.2 83981 1ni3A 392 3.28e+01 c.37.1.8 80531 d.15.10.2 80532 1pyaB 228 3.28e+01 1pyaB 1uc2A 481 3.34e+01 unknown_sccs -11725 1gvjA 146 3.46e+01 a.4.5.21 -293 1ash 150 3.70e+01 1ash a.1.1.2 15622 1uvqB 198 3.76e+01 b.1.1.2 -2659 d.19.1.1 -9348 1j55A 95 3.87e+01 a.39.1.2 77078 1top 162 3.87e+01 1ncx a.39.1.5 17223 1rypJ 204 3.87e+01 d.153.1.4 41878 2cb5A 453 3.90e+01 3gcb d.3.1.1 37035 1rdg 53 3.91e+01 1rb9 g.41.5.1 45221 1vk3A 615 3.94e+01 d.79.4.1 -10416 d.79.4.1 -10417 d.139.1.1 -11154 d.139.1.1 -11155 1qxyA 252 3.98e+01 d.127.1.1 -10993