# List of top-scoring protein chains for t04-100-30-bys hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nb8A 353 1.64e-52 d.3.1.9 80385 1ubi 76 3.79e-06 1ubi d.15.1.1 37584 1ogwA 76 2.52e-05 d.15.1.1 87001 1bt0A 76 4.99e-05 1ubi d.15.1.1 37607 1nddA 76 2.49e-04 1ubi d.15.1.1 37599 1vcbA 118 5.87e-02 1vcbA d.15.1.1 37603 1lm8B 118 5.91e-02 d.15.1.1 74033 1euvB 86 7.49e-02 1a5r d.15.1.1 37598 1qmyA 167 1.86e-01 1qmyA d.3.1.2 37094 1jmtA 104 3.29e-01 d.58.7.3 63180 1hleA 345 3.82e-01 1ovaA e.1.1.1 42618 1hkfA 122 5.28e-01 b.1.1.1 83553 1k6kA 143 7.84e-01 a.174.1.1 77274 1qxfA 66 8.30e-01 g.41.8.4 -12822 1sctB 151 1.12e+00 3sdhA a.1.1.2 15003 1scfA 273 1.21e+00 1exzA a.26.1.2 16873 1a28A 256 1.76e+00 1a28A a.123.1.1 19290 1fvuB 125 1.81e+00 1ixxB d.169.1.1 42346 1exrA 148 1.82e+00 1cll a.39.1.5 17299 1i37A 260 1.94e+00 1a28A a.123.1.1 61583 1sr7A 259 1.99e+00 1psrA 100 2.25e+00 1psrA a.39.1.2 17180 1kz7A 353 2.27e+00 a.87.1.1 73333 b.55.1.1 73334 1a0p 290 2.40e+00 1a0p a.60.9.1 18105 d.163.1.1 42165 1s6cA 183 3.01e+00 a.39.1.5 -858 1ash 150 3.35e+00 1ash a.1.1.2 15622 1rdg 53 3.46e+00 1rb9 g.41.5.1 45221 1uurA 473 3.54e+00 a.47.1.1 -968 b.2.5.5 -2904 d.93.1.1 -10632 1oglA 283 3.61e+00 unknown_sccs -1512 1bq9A 54 4.27e+00 1rb9 g.41.5.1 45238 1brfA 53 4.33e+00 1rb9 g.41.5.1 45236 1itbB 315 4.36e+00 1itbB b.1.1.4 21720 b.1.1.4 21721 b.1.1.4 21722 1avsA 90 4.36e+00 1cll a.39.1.5 17226 1id0A 152 4.58e+00 d.122.1.3 66111 1mijA 152 4.66e+00 a.4.1.1 79150 1dbhA 354 5.17e+00 1awe a.87.1.1 18514 b.55.1.1 26967 1j1vA 94 5.45e+00 a.4.12.2 83981 1kk1A 410 5.74e+00 b.43.3.1 72634 b.44.1.1 72635 c.37.1.8 72636 1a7cA 379 5.75e+00 1sek e.1.1.1 42660 1ni3A 392 5.94e+00 c.37.1.8 80531 d.15.10.2 80532 1d1vA 444 6.03e+00 1nseA d.174.1.1 59101 1cqxA 403 6.08e+00 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 6rxn 46 6.16e+00 1rb9 g.41.5.1 45222 1v2yA 105 6.17e+00 d.15.1.1 -9148 1ed5A 444 6.22e+00 1nseA d.174.1.1 42530 1ig8A 486 6.23e+00 2yhx c.55.1.3 64746 c.55.1.3 64747 1l1oC 181 6.36e+00 b.40.4.3 73480 1pyaB 228 6.66e+00 1pyaB 1a4pA 96 7.07e+00 1b4cA a.39.1.2 17176 1uf2C 421 7.12e+00 unknown_sccs -1522 b.19.1.1 -3155 1i50I 122 7.18e+00 g.41.3.1 61762 g.41.3.1 61763 1hq3C 136 7.48e+00 1aoiA a.22.1.1 16454 1f0jA 377 7.52e+00 1f0jA a.125.1.1 19346 1rwzA 245 7.99e+00 d.131.1.2 -11106 d.131.1.2 -11107 1d0cA 444 8.05e+00 d.174.1.1 64769 1q1aA 289 8.06e+00 c.31.1.5 -6781 1qb2A 109 8.27e+00 1qb2A a.36.1.1 17125 1rpa 342 8.36e+00 1cviA c.60.1.2 33983 1uc2A 481 8.64e+00 unknown_sccs -11725 1cmiA 85 8.78e+00 1cmiA d.39.1.1 38551 1owfA 99 9.45e+00 a.55.1.1 87487 2cblA 305 9.49e+00 2cblA a.39.1.7 17380 a.48.1.1 17774 d.93.1.1 40528 1ldjA 760 9.99e+00 a.4.5.34 73847 a.118.17.1 73848 e.40.1.1 73849 1uhgA 385 1.05e+01 e.1.1.1 88491 1qpaA 345 1.07e+01 1arv a.93.1.1 18585 1j55A 95 1.07e+01 a.39.1.2 77078 1g2fC 90 1.09e+01 k.12.1.1 60222 1rvgA 305 1.15e+01 c.1.10.2 -5500 1lla 628 1.18e+01 1lla a.85.1.1 18485 a.86.1.1 18496 b.1.18.3 21861 1foeA 377 1.29e+01 1foeA a.87.1.1 18517 b.55.1.1 26969 1spxA 278 1.29e+01 c.2.1.2 -5870 1hgxA 183 1.32e+01 1tc1A c.61.1.1 34027 1mho 88 1.39e+01 1b4cA a.39.1.2 17171 1top 162 1.44e+01 1ncx a.39.1.5 17223 1gvjA 146 1.47e+01 a.4.5.21 -293 1qc7A 101 1.47e+01 1qc7A a.118.14.1 18456 1alvA 173 1.56e+01 1alvA a.39.1.8 17370 1lj5A 379 1.61e+01 e.1.1.1 73928 1bgp 309 1.65e+01 1bgp a.93.1.1 18690 1kk8B 139 1.73e+01 a.39.1.5 77430 1eg3A 261 1.75e+01 1eg3A a.39.1.7 17376 a.39.1.7 17377 b.72.1.1 27805 1lfdA 87 1.79e+01 1lfdA d.15.1.5 37622 1aol 228 1.80e+01 1aol b.20.1.1 23840 1bgc 174 1.81e+01 1bgc a.26.1.1 16822 1ggzA 148 1.83e+01 a.39.1.5 70176 1rj1A 151 1.91e+01 unknown_sccs -753 1ift 263 1.92e+01 1mrj d.165.1.1 42211 1jmmA 377 1.94e+01 b.30.6.1 71749 1a1iA 90 1.94e+01 1aayA g.37.1.1 44998 g.37.1.1 44999 g.37.1.1 45000 1es9A 232 1.98e+01 1wab c.23.10.3 31340 1zaaC 87 2.02e+01 1aayA g.37.1.1 45013 g.37.1.1 45014 g.37.1.1 45015 1a32 88 2.03e+01 1a32 a.16.1.2 16384 1huuA 90 2.06e+01 1huuA a.55.1.1 17897 1aayA 90 2.14e+01 1aayA g.37.1.1 45001 g.37.1.1 45002 g.37.1.1 45003 1ngnA 155 2.23e+01 a.96.1.2 85697 1a8p 258 2.25e+01 1fdr b.43.4.2 25654 c.25.1.1 31544 1avyA 74 2.31e+01 1avyB h.1.17.1 45656 1jmsA 381 2.38e+01 a.60.6.1 66889 a.60.12.1 75862 d.218.1.2 75863 1nzjA 298 2.39e+01 c.26.1.1 -6600 1qf8A 182 2.43e+01 1qf8A g.41.4.1 45212 2mtaC 147 2.50e+01 2mtaC a.3.1.1 15908 1hc7A 477 2.59e+01 1hc7A c.51.1.1 60938 d.68.5.1 60940 d.104.1.1 60939 1n1jA 93 2.59e+01 a.22.1.3 79813 1ovaA 386 2.60e+01 1ovaA e.1.1.1 42619 1qw2A 102 2.65e+01 unknown_sccs -9601 1rb9 53 2.65e+01 1rb9 g.41.5.1 45214 1dxgA 36 2.67e+01 1dxgA g.41.5.2 45247 1kuuA 202 2.70e+01 d.153.2.1 73019 1l9hA 349 2.73e+01 f.13.1.2 73720 1jalA 363 2.74e+01 c.37.1.8 84138 d.15.10.2 84139 1mtpA 323 2.79e+01 e.1.1.1 85107 1mzbA 136 2.82e+01 unknown_sccs -266 1hr6A 475 2.97e+01 1hr6A d.185.1.1 61164 d.185.1.1 61165 1r62A 160 2.99e+01 1m2dA 110 3.14e+01 c.47.1.11 78476 1ecrA 309 3.27e+01 1ecrA e.2.1.1 42678 1t0yA 122 3.31e+01 d.15.1.1 -9151 1vid 221 3.39e+01 1vid c.66.1.1 34178 1f83A 425 3.44e+01 1f82A d.92.1.7 40306 1r4wA 226 3.44e+01 unknown_sccs -7447 1qxyA 252 3.51e+01 d.127.1.1 -10993 1bf5A 545 3.55e+01 1bg1A a.47.1.1 17766 b.2.5.5 22460 d.93.1.1 40526 1g4wR 383 3.57e+01 1g4uS a.24.11.1 16644 c.45.1.2 32692 1k3sA 113 3.62e+01 d.198.1.1 68120 1rds 105 3.65e+01 9rnt d.1.1.4 36236 1b8zA 90 3.66e+01 1huuA a.55.1.1 17902 1g66A 207 3.69e+01 1bs9 unknown_sccs 31329 1tx4A 198 3.74e+01 1tx4A a.116.1.1 19098 1vh4A 435 3.76e+01 unknown_sccs -4794 1nxhA 126 3.81e+01 unknown_sccs -1239 1hxrA 115 3.84e+01 1fwqA b.88.1.1 28392 1nijA 318 3.85e+01 c.37.1.10 85741 d.237.1.1 85742 1khdA 345 3.87e+01 a.46.2.1 77400 c.27.1.1 77401 1r75A 141 3.92e+01 unknown_sccs -3243 1q4mA 221 3.98e+01 unknown_sccs -1910 1ow4A 129 3.99e+01 a.39.2.1 -876