# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nb8A 353 4.66e-59 d.3.1.9 80385 1ubi 76 1.09e-02 1ubi d.15.1.1 37584 1ogwA 76 1.30e-02 d.15.1.1 87001 1bt0A 76 2.42e-01 1ubi d.15.1.1 37607 1qmyA 167 5.22e-01 1qmyA d.3.1.2 37094 1pqzA 238 5.81e-01 1nddA 76 1.79e+00 1ubi d.15.1.1 37599 2pviA 157 1.80e+00 3pviA c.52.1.6 33302 3pviA 157 1.91e+00 3pviA c.52.1.6 33300 1vcbA 118 1.97e+00 1vcbA d.15.1.1 37603 1hkfA 122 2.48e+00 b.1.1.1 83553 1lm8B 118 4.85e+00 d.15.1.1 74033 1us7B 265 6.11e+00 unknown_sccs -1518 1l2hA 153 6.14e+00 b.42.1.2 77655 1kr4A 125 7.09e+00 d.58.5.2 72889 1pwbA 177 7.26e+00 d.169.1.1 -11641 h.1.1.1 -12890 1r13A 148 8.70e+00 d.169.1.1 -11646 h.1.1.1 -12895 1jf2A 195 9.29e+00 1ej3A a.39.1.5 62930 1ae7 119 9.37e+00 1poa a.133.1.2 19553 3pcgM 238 1.08e+01 3pchM b.3.6.1 22742 1v2yA 105 1.14e+01 d.15.1.1 -9148 1rdg 53 1.31e+01 1rb9 g.41.5.1 45221 1dokA 77 1.46e+01 1dokA d.9.1.1 37420 1np3A 338 1.57e+01 a.100.1.2 85946 c.2.1.6 85947 1lp3A 519 1.63e+01 b.121.5.2 74169 6rxn 46 1.76e+01 1rb9 g.41.5.1 45222 1nu4A 97 1.90e+01 d.58.7.1 80731 1bgc 174 1.97e+01 1bgc a.26.1.1 16822 1xpa 122 2.13e+01 1xpa a.6.1.2 16308 g.39.1.5 45151 1f83A 425 2.13e+01 1f82A d.92.1.7 40306 1qddA 144 2.35e+01 1qddA d.169.1.1 42324 1s72N 187 2.58e+01 1jj2M 186 2.61e+01 1ffkK c.55.4.1 63098 1p80A 753 2.66e+01 c.23.16.3 -6547 e.5.1.1 -11840 1pk5A 248 2.67e+01 a.123.1.1 88139 1foeA 377 2.69e+01 1foeA a.87.1.1 18517 b.55.1.1 26969 1k92A 455 2.73e+01 c.26.2.1 68325 d.210.1.1 68326 1jqgA 433 2.87e+01 c.56.5.1 71791 d.58.3.1 71792 3sdhA 146 2.90e+01 3sdhA a.1.1.2 14984 1f0xA 571 2.96e+01 1f0xA d.58.32.2 39483 d.145.1.1 41746 2bltA 361 2.97e+01 1gceA e.3.1.1 42739 1m7vA 363 3.01e+01 d.174.1.1 78748 1oiaA 95 3.01e+01 d.58.7.1 87051 1el4A 195 3.07e+01 1ej3A a.39.1.5 59453 1jfmA 174 3.20e+01 d.19.1.1 66640 1cvl 319 3.21e+01 1cvl c.69.1.18 34786 1cf9A 753 3.25e+01 1cf9A c.23.16.3 31441 e.5.1.1 42815 1grj 158 3.49e+01 1grj a.2.1.1 15691 d.26.1.2 38433 1ubeA 349 3.50e+01 c.37.1.11 88412 d.48.1.1 88413 1ldjA 760 3.58e+01 a.4.5.34 73847 a.118.17.1 73848 e.40.1.1 73849 1ejfA 125 3.60e+01 1ejfA b.15.1.2 23683 1iv8A 720 3.66e+01 b.71.1.1 76842 c.1.8.1 76843 1fnnA 389 3.76e+01 1fnnA a.4.5.11 16129 c.37.1.20 32426 1fx3A 169 3.78e+01 1fx3B d.33.1.1 38524