CreatePredAlphaCost pred_alpha2k alpha11 T0235.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0235.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 10 near_backbone 3 way_back 3 dry5 10 dry6.5 20 dry8 10 dry12 5 \
	phobic_fit 1 \
	sidechain 4 \
	bystroff 6 \
	soft_clashes 30  backbone_clashes 2 \
	break 80  \
	pred_alpha2k 1 \
	pred_alpha04 1 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 2


#from T0235.t04.dssp-ehl2.constraints
HelixConstraint 	Y349	A351	0.6053
HelixConstraint 	R357	K367	0.6059
HelixConstraint 	K370	K375	0.6294
HelixConstraint 	R391	L400	0.7674
HelixConstraint 	E404	H415	0.6414



# Constraints to hold the two end residues at the right separation.
Constraint P347.N  P426.N	13.3 13.372 13.5	10
Constraint P347.CA P426.CA	12.6 12.698 12.8	10
Constraint P347.CG P426.CG	13.7 13.780 13.9	10
Constraint P347.O  P426.O	12.7 12.820 12.9	10
Constraint P347.C  N425.C	11.5 11.663 11.8	5
Constraint E348.CA N425.CA	11.3 11.540 11.8	5
Constraint E348.C  N425.N	9.8  10.110 10.5	5