Best Alignments for T0235

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2occJ/T0235-2occJ-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 2occJ/T0235-2occJ-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.5129e+015.1915e+00 2occJ f.23.4.1
1m1eB/T0235-1m1eB-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1m1eB/T0235-1m1eB-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.6404e+011.2632e+01 a.161.1.1
1v54J/T0235-1v54J-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1v54J/T0235-1v54J-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.7430e+015.6255e+00 f.23.4.1
1oiwA/T0235-1oiwA-t2k-local-adpstyle1.a2m 1oiwA/T0235-1oiwA-t2k-local-adpstyle1.al 1.9391e+012.2066e+01 c.37.1.8
1lujB/T0235-1lujB-t04-local-adpstyle5.a2m 1lujB/T0235-1lujB-t04-local-adpstyle5.al 1.9998e+011.8799e+01 a.161.1.1
1s9aA/T0235-1s9aA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1s9aA/T0235-1s9aA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.1158e+018.0650e+00
1aotF/1lckA-T0235-fssp-local-adpstyle5.a2m 1aotF/1lckA-T0235-fssp-local-adpstyle5.al 2.4872e+017.9137e+00 1lckA d.93.1.1
1lvwA/T0235-1lvwA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1lvwA/T0235-1lvwA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.5243e+015.1404e+00 c.68.1.6
1ehkC/T0235-1ehkC-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1ehkC/T0235-1ehkC-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.5613e+011.6660e+01 1ehkC f.23.9.1
1nmmA/T0235-1nmmA-t2k-global-adpstyle1.a2m 1nmmA/T0235-1nmmA-t2k-global-adpstyle1.al 2.7021e+011.6557e+01 d.2.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001