(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html
Citations (SAM, SAM-T99, HMMs)
- R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
- K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
- A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
Sequence numbers correspond to the following labels:
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- T0235 EC_3.1.2.15, Saccharomyces cerevisiae
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- gi|14318532|ref|NP_116665.1|_347:426 Ubiquitin-specific protease situated in the base subcomplex of the 26S proteasome, releases free ubiquitin from branched polyubiquitin chains; deletion causes hypersensitivity to cycloheximide and other toxic compounds; Ubp6p [Saccharomyces cerevisiae]
- gi|1174863|sp|P43593|UBP6_YEAST Ubiquitin carboxyl-terminal hydrolase 6 (Ubiquitin thiolesterase 6) (Ubiquitin-specific processing protease 6) (Deubiquitinating enzyme 6) [Taxonomy]
- gi|1084735|pir||S56265 hypothetical protein YFR010w - yeast (Saccharomyces cerevisiae) [Taxonomy]
- gi|836765|dbj|BAA09249.1| YFR010W [Saccharomyces cerevisiae]
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10 20 30 40 50 60
| | | | | |
1 PEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEE
2 PEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEE
3 PEYATAKIKVRDELREVDKQREDDLKEFNQNILEHVPL--SLTPAERYETQMALEESKREHWLAE
4 PEYAQTKIQVREAFREVDKERAESIRERKRSKFNPAPAEGGSTPAEAAEIARSLEESTREKWARA
5 PEYANEKIKVREELREVEKAKNEKEREAKKRKVEQTDV--VMTPKEEYETKKALEESEREYWLNE
70 80
| |
1 YKKHFPPNLEKGENP
2 YKKHFPPNLEKGENP
3 FAKKFPKDLRQGENP
4 FAAKTPADLGRGENP
5 FKKRFPSNLAAGENP