# List of top-scoring protein chains for t2k-100-30-near-backbone-11 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1fpoA	171	2.38e+00	1fpoA	a.2.3.1	15693
				a.23.1.1	16487
1us7B	265	2.87e+00		unknown_sccs	-1518
1pq1B	33	6.44e+00			
1rxqA	178	6.64e+00			
1ef1C	90	6.98e+00	1ef1C	a.137.5.1	19642
1a17	166	7.18e+00	1a17	a.118.8.1	19206
1iq3A	110	7.39e+00	1iq3A	a.39.1.6	62640
1g8iA	190	8.44e+00	1rec	a.39.1.5	60363
1t62A	166	8.82e+00			
1gmxA	108	8.99e+00		c.46.1.3	65355
1ltqA	301	1.01e+01		c.108.1.9	78208
				c.37.1.1	78209
1sv7A	109	1.19e+01			
1ddzA	496	1.23e+01	1ddzA	c.53.2.1	33372
				c.53.2.1	33373
3thiA	371	1.35e+01	2thiA	c.94.1.1	35792
1gn0A	108	1.41e+01		c.46.1.3	65358
1afwA	393	1.50e+01	1afwA	c.95.1.1	35900
				c.95.1.1	35901
1pxtB	390	1.59e+01	1afwA	c.95.1.1	35906
				c.95.1.1	35907
1jdqA	98	1.59e+01		d.68.3.3	66559
1hkhA	279	1.69e+01		c.69.1.12	-8342
2thiA	379	1.90e+01	2thiA	c.94.1.1	35794
1p65A	73	1.94e+01		unknown_sccs	-10331
1rec	201	1.99e+01	1rec	a.39.1.5	17326
1b79A	119	2.11e+01	1b79A	a.81.1.1	18451
1t0gA	109	2.15e+01		unknown_sccs	-10955
1k4mA	213	2.21e+01		c.26.1.3	77258
1trkA	680	2.28e+01	1trkA	c.36.1.6	31804
				c.36.1.10	31803
				c.48.1.1	33090
1htmB	138	2.31e+01	1htmB	h.3.1.1	45677
1gpuA	680	2.40e+01		c.36.1.6	65455
				c.36.1.10	65454
				c.48.1.1	65456
1fzkA	274	2.53e+01	1agdA	b.1.1.2	60149
				d.19.1.1	60150
1kc6A	257	2.72e+01		c.52.1.19	68419
1tkaA	678	2.86e+01	1trkA	c.36.1.6	31816
				c.36.1.10	31815
				c.48.1.1	33096
1lnwA	147	2.91e+01		a.4.5.28	78104
1kpuA	274	2.94e+01		b.1.1.2	84456
				d.19.1.1	84457
1oivA	191	2.95e+01		c.37.1.8	-7074
1knqA	175	2.95e+01		c.37.1.17	72786
1g7dA	106	3.07e+01	1g7dA	a.71.1.1	18318
1p3qQ	54	3.32e+01		a.5.2.4	87748
1aje	194	3.34e+01	1ctqA	c.37.1.8	32071
1ezjA	115	3.36e+01	1ezjA	h.1.14.1	45638
1g7pA	274	3.37e+01		b.1.1.2	70153
				d.19.1.1	70154
1s9aA	257	3.49e+01			
1trrA	107	3.68e+01	1jhgA	a.4.12.1	19017
1qgrB	27	3.69e+01			
1rcsA	105	3.71e+01	1jhgA	a.4.12.1	19025
1jfxA	217	3.77e+01		c.1.8.8	62943