# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m1eB 81 1.52e+00 a.161.1.1 78400 1lr1A 61 1.96e+00 a.155.1.1 78154 1jj22 92 2.94e+00 1ffkZ 1s723 92 2.94e+00 1gyxA 76 3.22e+00 d.80.1.1 76387 1ffkZ 92 3.40e+00 1ffkZ g.41.8.3 45317 1jdqA 98 3.78e+00 d.68.3.3 66559 1ef1C 90 4.27e+00 1ef1C a.137.5.1 19642 1s9aA 257 4.42e+00 2occJ 59 4.65e+00 2occJ f.23.4.1 43524 1v54J 59 4.80e+00 f.23.4.1 -12112 1us7B 265 6.14e+00 unknown_sccs -1518 1g8iA 190 6.36e+00 1rec a.39.1.5 60363 1jk0B 345 7.71e+00 a.25.1.2 63143 1gcqA 61 8.58e+00 1ckaA b.34.2.1 60434 1d4bA 122 8.87e+00 1d4bA d.15.2.1 37638 1hq3C 136 9.01e+00 1aoiA a.22.1.1 16454 1o1fC 147 9.03e+00 i.15.1.1 80997 1gfc 59 1.01e+01 1griA b.34.2.1 24537 1lslA 113 1.04e+01 g.60.1.1 78178 g.60.1.1 78179 1qo7A 394 1.06e+01 1qo7A c.69.1.11 34697 1q02A 52 1.06e+01 a.5.2.1 -351 1rxqA 178 1.09e+01 1aoiA 116 1.21e+01 1aoiA a.22.1.1 16462 1uj0A 62 1.29e+01 b.34.2.1 -3570 1iq3A 110 1.36e+01 1iq3A a.39.1.6 62640 1fgjA 546 1.38e+01 1fgjA a.138.1.3 19679 1k4mA 213 1.47e+01 c.26.1.3 77258 2lfb 100 1.50e+01 1lfb a.4.1.1 15990 1tvs 75 1.61e+01 1tvs j.40.1.1 46303 1ds6B 180 1.82e+01 1rhoA b.1.18.8 21898 1ilk 151 1.84e+01 2ilk a.26.1.3 16886 1uelB 48 1.94e+01 j.105.1.1 -13406 1d0dA 60 2.03e+01 1kigI g.8.1.2 44566 1ng2A 193 2.06e+01 b.34.2.1 85660 b.34.2.1 85661 1jggA 60 2.15e+01 2hddA a.4.1.1 62950 1a15A 67 2.48e+01 1a15A d.9.1.1 37451 1s0yB 71 2.52e+01 d.80.1.1 -10442 1tap 60 2.59e+01 1kigI g.8.1.2 44569 1pufA 77 2.70e+01 a.4.1.1 -191 1rprA 63 2.80e+01 1nkd a.30.1.1 16989 1qg7A 67 2.88e+01 1a15A d.9.1.1 37449 1b4aA 149 2.88e+01 1b4aA a.4.5.3 16088 d.74.2.1 39721 1an4A 65 2.91e+01 1an4A a.38.1.1 17136 1hxs1 302 2.99e+01 1jo8A 58 3.03e+01 b.34.2.1 71774 1fcdA 401 3.03e+01 1fcdA c.3.1.5 30593 c.3.1.5 30594 d.87.1.1 40218 1oebA 62 3.06e+01 b.34.2.1 86909 1pyaB 228 3.10e+01 1pyaB 1n3hA 207 3.12e+01 b.55.1.2 -4350 1kigI 60 3.22e+01 1kigI g.8.1.2 44567 1rzhM 307 3.27e+01 f.26.1.1 -12227 1c3gA 170 3.51e+01 1c3gA b.4.1.1 22831 b.4.1.1 22832 1n1cA 217 3.55e+01 a.184.1.1 85254 1knaA 69 3.72e+01 b.34.13.2 72771 1omrA 201 3.77e+01 a.39.1.5 -854 1p9cA 45 3.98e+01 j.105.1.1 -13404