# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lvwA 295 3.86e-01 c.68.1.6 84723 1g8iA 190 5.35e-01 1rec a.39.1.5 60363 1top 162 7.91e-01 1ncx a.39.1.5 17223 1ggzA 148 1.14e+00 a.39.1.5 70176 1g4yR 148 1.73e+00 1cll a.39.1.5 60252 1e7lA 157 1.80e+00 1en7A a.140.4.1 64728 d.4.1.5 64729 1htrP 43 2.28e+00 1htrP b.50.1.2 26852 1k8kG 151 2.36e+00 a.118.13.1 68313 2occC 261 2.37e+00 1ocrC f.25.1.1 43520 1v54C 261 3.32e+00 f.25.1.1 -12239 1smtA 122 4.05e+00 1smtA a.4.5.5 16109 2occJ 59 4.34e+00 2occJ f.23.4.1 43524 1b79A 119 4.39e+00 1b79A a.81.1.1 18451 1ef8A 261 4.54e+00 1ef8A c.14.1.3 30921 3proC 166 4.56e+00 3proC d.52.1.1 38812 d.52.1.1 38813 1v54J 59 4.73e+00 f.23.4.1 -12112 1mr8A 93 4.74e+00 1b4cA a.39.1.2 17186 1m45A 148 5.16e+00 a.39.1.5 78598 1r1tA 122 5.31e+00 1kn1A 160 5.42e+00 a.1.1.3 77455 1nu7D 282 6.41e+00 unknown_sccs -433 unknown_sccs -434 1oivA 191 6.91e+00 c.37.1.8 -7074 2hts 88 7.20e+00 2hts a.4.5.22 16174 1po5A 476 7.33e+00 a.104.1.1 -1467 1g1eB 89 7.84e+00 1g1eB a.59.1.1 17931 1t0gA 109 8.33e+00 unknown_sccs -10955 1us7B 265 1.01e+01 unknown_sccs -1518 1rzhM 307 1.01e+01 f.26.1.1 -12227 1sedA 117 1.09e+01 1gotB 340 1.10e+01 1tbgA b.69.4.1 27648 1broA 277 1.12e+01 1brt c.69.1.12 34700 1n6zA 105 1.13e+01 unknown_sccs 85369 1idsA 207 1.17e+01 1avmA a.2.11.1 15722 d.44.1.1 38730 1exrA 148 1.21e+01 1cll a.39.1.5 17299 1m12A 84 1.30e+01 a.64.1.1 84745 1pa2A 306 1.34e+01 1bgp a.93.1.1 18693 1jggA 60 1.37e+01 2hddA a.4.1.1 62950 1p4wA 99 1.40e+01 a.4.6.2 87783 1irqA 71 1.52e+01 unknown_sccs 66297 1enh 54 1.58e+01 2hddA a.4.1.1 15973 1omrA 201 1.62e+01 a.39.1.5 -854 1gwuA 309 1.68e+01 a.93.1.1 83351 1vk9A 151 1.72e+01 1jr8A 117 1.76e+01 a.24.15.1 67115 1hq3C 136 1.77e+01 1aoiA a.22.1.1 16454 1f45B 197 1.77e+01 1f45B a.26.1.1 59642 1obwA 175 1.86e+01 2prd b.40.5.1 25416 7atjA 308 1.86e+01 1bgp a.93.1.1 18673 1h3lA 87 1.89e+01 a.177.1.1 76639 2hddA 61 1.91e+01 2hddA a.4.1.1 15971 1s0yB 71 1.92e+01 d.80.1.1 -10442 1je8A 82 1.94e+01 a.4.6.2 77108 1jkoC 52 2.03e+01 a.4.1.2 66809 1rf8B 100 2.03e+01 unknown_sccs -2005 1qgjA 300 2.07e+01 1bgp a.93.1.1 18691 1d02A 202 2.09e+01 1d02A c.52.1.8 33313 1pyaB 228 2.13e+01 1pyaB 1q3eA 207 2.18e+01 b.82.3.2 -4922 1fipA 98 2.19e+01 1fipA unknown_sccs 18980 1b9hA 388 2.31e+01 1b9hA c.67.1.4 34488 1kyqA 274 2.33e+01 c.2.1.11 73281 e.37.1.1 73282 1j1jA 240 2.59e+01 a.118.16.1 -1637 1udh 244 2.63e+01 3eugA c.18.1.1 31015 1etxA 98 2.87e+01 1fipA unknown_sccs 18978 1jhgA 101 3.09e+01 1jhgA a.4.12.1 19009 1pufB 73 3.10e+01 a.4.1.1 -192 1efyA 350 3.13e+01 1a26 a.41.1.1 17413 d.166.1.2 42275 1pufA 77 3.15e+01 a.4.1.1 -191 1iieA 75 3.20e+01 1iieA a.109.1.1 19039 1brt 277 3.28e+01 1brt c.69.1.12 34699 1gxuA 91 3.29e+01 d.58.10.1 76378 1j7gA 144 3.39e+01 c.110.1.1 84130 1avsA 90 3.40e+01 1cll a.39.1.5 17226 1huqA 164 3.48e+01 1byuA c.37.1.8 32020 1r2qA 170 3.52e+01 c.37.1.8 -7071 1jboB 172 3.54e+01 a.1.1.3 84151 1ns5A 155 3.71e+01 c.116.1.3 80705 1nv8A 284 3.75e+01 c.66.1.30 86224 1ekjA 221 3.79e+01 1ekjB c.53.2.1 33364 1fnoA 417 3.88e+01 c.56.5.4 75841 d.58.19.1 70145 1s1hM 132 3.94e+01