# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1fpoA	171	1.43e+00	1fpoA	a.2.3.1	15693
				a.23.1.1	16487
1us7B	265	2.49e+00		unknown_sccs	-1518
1pq1B	33	4.32e+00			
1g8iA	190	5.87e+00	1rec	a.39.1.5	60363
1rxqA	178	6.11e+00			
1gmxA	108	7.40e+00		c.46.1.3	65355
1ef1C	90	7.88e+00	1ef1C	a.137.5.1	19642
1t62A	166	9.44e+00			
3thiA	371	1.02e+01	2thiA	c.94.1.1	35792
1afwA	393	1.11e+01	1afwA	c.95.1.1	35900
				c.95.1.1	35901
1gpuA	680	1.15e+01		c.36.1.6	65455
				c.36.1.10	65454
				c.48.1.1	65456
1trkA	680	1.22e+01	1trkA	c.36.1.6	31804
				c.36.1.10	31803
				c.48.1.1	33090
1rec	201	1.35e+01	1rec	a.39.1.5	17326
1hkhA	279	1.41e+01		c.69.1.12	-8342
1cfzA	162	1.64e+01	1cfzA	c.56.1.1	33754
1t0gA	109	1.70e+01		unknown_sccs	-10955
1k4mA	213	1.86e+01		c.26.1.3	77258
1kc6A	257	1.89e+01		c.52.1.19	68419
1ezjA	115	2.45e+01	1ezjA	h.1.14.1	45638
1knqA	175	2.53e+01		c.37.1.17	72786
1jfxA	217	2.54e+01		c.1.8.8	62943
1p3qQ	54	2.55e+01		a.5.2.4	87748
1lnwA	147	2.62e+01		a.4.5.28	78104
1a17	166	2.98e+01	1a17	a.118.8.1	19206
1b79A	119	2.98e+01	1b79A	a.81.1.1	18451
1oivA	191	3.05e+01		c.37.1.8	-7074
1qgrB	27	3.06e+01			
1s9aA	257	3.38e+01			
1omrA	201	3.39e+01		a.39.1.5	-854
1ly1A	181	3.57e+01		c.37.1.1	74334
1rktA	205	3.64e+01		a.4.1.9	-210
				a.121.1.1	-1663
1jhgA	101	3.65e+01	1jhgA	a.4.12.1	19009
1ewkA	490	3.74e+01	1ewkA	c.93.1.1	35712
1lk2A	274	3.75e+01		b.1.1.2	-2610
				d.19.1.1	-9365
1p65A	73	3.77e+01		unknown_sccs	-10331
1d7mA	101	3.92e+01	1d7mA	h.1.10.1	45628