# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1aisB 200 8.34e-01 1aisB a.74.1.2 18384 a.74.1.2 18385 2cblA 305 1.26e+00 2cblA a.39.1.7 17380 a.48.1.1 17774 d.93.1.1 40528 1trkA 680 2.50e+00 1trkA c.36.1.6 31804 c.36.1.10 31803 c.48.1.1 33090 1k5nA 276 2.57e+00 b.1.1.2 77266 d.19.1.1 77267 1gpuA 680 2.66e+00 c.36.1.6 65455 c.36.1.10 65454 c.48.1.1 65456 1ehkC 33 3.50e+00 1ehkC f.23.9.1 43626 1lk2A 274 3.98e+00 b.1.1.2 -2610 d.19.1.1 -9365 1fzoA 274 4.27e+00 1agdA b.1.1.2 60155 d.19.1.1 60156 1ekeA 230 4.49e+00 1ekeA c.55.3.1 33572 1g1eB 89 4.73e+00 1g1eB a.59.1.1 17931 1snnA 227 5.01e+00 1pufB 73 6.03e+00 a.4.1.1 -192 1gs5A 258 6.15e+00 c.73.1.2 70395 1pvyA 227 6.21e+00 d.115.1.2 -10937 1pufA 77 6.67e+00 a.4.1.1 -191 1mun 225 6.81e+00 1mun a.96.1.2 18744 1ucpA 91 6.85e+00 unknown_sccs -1193 1pyaB 228 6.99e+00 1pyaB 1g4yR 148 7.95e+00 1cll a.39.1.5 60252 1lvwA 295 8.07e+00 c.68.1.6 84723 1aj8A 371 8.29e+00 1aj8A a.103.1.1 18900 1jggA 60 9.25e+00 2hddA a.4.1.1 62950 1ei9A 279 9.39e+00 1ei9A c.69.1.13 34713 1i4fA 275 9.84e+00 1agdA b.1.1.2 61687 d.19.1.1 61688 1hkhA 279 1.01e+01 c.69.1.12 -8342 1s9aA 257 1.02e+01 1eexB 224 1.02e+01 1dioB c.51.3.1 33213 1dk8A 147 1.02e+01 1agrE a.91.1.1 18548 1ggzA 148 1.03e+01 a.39.1.5 70176 1kaeA 434 1.11e+01 c.82.1.2 72247 1dat 174 1.11e+01 2fha a.25.1.1 16677 1foeA 377 1.16e+01 1foeA a.87.1.1 18517 b.55.1.1 26969 1v54J 59 1.29e+01 f.23.4.1 -12112 2occJ 59 1.29e+01 2occJ f.23.4.1 43524 1g8iA 190 1.30e+01 1rec a.39.1.5 60363 1bgf 124 1.44e+01 1bgf a.90.1.1 18537 1r4pA 297 1.45e+01 d.165.1.2 -11560 1nxcA 478 1.47e+01 a.102.2.1 -1333 1pq1A 196 1.54e+01 f.1.4.1 -12055 1rec 201 1.58e+01 1rec a.39.1.5 17326 1m1eB 81 1.61e+01 a.161.1.1 78400 1omrA 201 1.61e+01 a.39.1.5 -854 1ca1 370 1.68e+01 1ca1 a.124.1.1 19340 b.12.1.3 23648 1i50A 1733 1.75e+01 e.29.1.2 61754 1bupA 386 1.78e+01 1ba1 c.55.1.1 33377 c.55.1.1 33378 1ax4A 467 1.80e+01 1ax4A c.67.1.2 34391 1t0gA 109 1.89e+01 unknown_sccs -10955 1dxrM 323 1.94e+01 6prcM f.26.1.1 43432 1top 162 1.96e+01 1ncx a.39.1.5 17223 1kepA 348 2.00e+01 c.2.1.2 68536 1e3dB 542 2.12e+01 1h2rL e.18.1.1 59189 1ac5 483 2.18e+01 1ac5 c.69.1.5 34653 1ll7A 392 2.26e+01 c.1.8.5 78085 d.26.3.1 78086 2cro 71 2.27e+01 1r69 a.35.1.2 17038 1neyA 247 2.28e+01 c.1.1.1 80449 1oc2A 348 2.41e+01 c.2.1.2 -5753 1ockA 412 2.68e+01 c.117.1.1 86802 1i45A 248 2.78e+01 1amk c.1.1.1 61665 1alu 186 2.78e+01 1alu a.26.1.1 16826 1ithA 141 2.80e+01 1ithA a.1.1.2 15623 1d2kA 392 2.84e+01 1d2kA c.1.8.5 29008 d.26.3.1 38442 1us7B 265 2.89e+01 unknown_sccs -1518 1afwA 393 2.89e+01 1afwA c.95.1.1 35900 c.95.1.1 35901 1lci 550 2.90e+01 1lci e.23.1.1 43349 1rylA 167 2.92e+01 1enh 54 2.96e+01 2hddA a.4.1.1 15973 1exrA 148 3.12e+01 1cll a.39.1.5 17299 1a8i 842 3.23e+01 1a8i c.87.1.4 35490 1i39A 225 3.38e+01 1ekeA c.55.3.1 61585 1b72B 87 3.40e+01 1akhA a.4.1.1 16001 2liv 344 3.42e+01 2liv c.93.1.1 35708 1m55A 197 3.48e+01 d.89.1.3 74469 1pq1B 33 3.50e+01 1j30A 144 3.52e+01 a.25.1.1 -650 1fl1A 230 3.53e+01 1at3A b.57.1.1 27023 1jfzA 154 3.53e+01 a.149.1.1 66655 1va4A 279 3.55e+01 2hddA 61 3.56e+01 2hddA a.4.1.1 15971 1e0cA 271 3.59e+01 1e0cA c.46.1.2 32717 c.46.1.2 32718 1odoA 408 3.60e+01 a.104.1.1 -1463 1b79A 119 3.72e+01 1b79A a.81.1.1 18451 1fpoA 171 3.75e+01 1fpoA a.2.3.1 15693 a.23.1.1 16487 1vjnA 220 3.78e+01 unknown_sccs -11458 1ly1A 181 3.82e+01 c.37.1.1 74334 1l0iA 78 3.87e+01 a.28.1.1 77643 1ehyA 294 3.90e+01 1ehyA c.69.1.11 34693 2btvA 901 3.90e+01 2btvA e.28.1.1 43376