# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1jj22	92	3.32e+00	1ffkZ		
1s723	92	3.32e+00			
1ef1C	90	3.43e+00	1ef1C	a.137.5.1	19642
1jhgA	101	3.65e+00	1jhgA	a.4.12.1	19009
1jj2Y	73	4.44e+00	1ffkW	g.41.8.1	63110
1rzhM	307	4.58e+00		f.26.1.1	-12227
1hxs1	302	4.62e+00			
1g8iA	190	5.64e+00	1rec	a.39.1.5	60363
1fipA	98	6.12e+00	1fipA	unknown_sccs	18980
1pufA	77	7.44e+00		a.4.1.1	-191
1nekC	129	7.68e+00		f.21.2.2	80431
1hq3C	136	7.95e+00	1aoiA	a.22.1.1	16454
1c8bA	371	1.03e+01	1c8bA	c.56.1.2	59082
1n6zA	105	1.16e+01		unknown_sccs	85369
1m1eB	81	1.17e+01		a.161.1.1	78400
1smtA	122	1.19e+01	1smtA	a.4.5.5	16109
2occH	85	1.25e+01	2occH	a.51.1.1	17796
1a0aA	63	1.27e+01	1a0aA	a.38.1.1	17138
1lshB	319	1.37e+01		f.7.1.1	74245
1b35C	282	1.38e+01	1b35C		
1b79A	119	1.38e+01	1b79A	a.81.1.1	18451
1k4mA	213	1.42e+01		c.26.1.3	77258
1omrA	201	1.49e+01		a.39.1.5	-854
2if1	126	1.54e+01	2if1	d.64.1.1	39547
1pq1B	33	1.61e+01			
1v54H	85	1.63e+01		a.51.1.1	-979
1a0rP	245	1.82e+01	1b9yC	c.47.1.6	33054
1r1tA	122	1.83e+01			
1d0dA	60	1.95e+01	1kigI	g.8.1.2	44566
1ng2A	193	1.96e+01		b.34.2.1	85660
				b.34.2.1	85661
1k8kG	151	2.07e+01		a.118.13.1	68313
1s0yB	71	2.09e+01		d.80.1.1	-10442
1gyxA	76	2.14e+01		d.80.1.1	76387
1top	162	2.27e+01	1ncx	a.39.1.5	17223
1gcqA	61	2.30e+01	1ckaA	b.34.2.1	60434
1rxqA	178	2.41e+01			
1i52A	236	2.57e+01	1i52A	c.68.1.13	61767
1q02A	52	2.68e+01		a.5.2.1	-351
1pvc1	301	2.81e+01	1pov1		
1t0gA	109	2.87e+01		unknown_sccs	-10955
1j8bA	112	3.04e+01		d.222.1.1	77101
1lslA	113	3.04e+01		g.60.1.1	78178
				g.60.1.1	78179
1h6qA	168	3.11e+01	1h6qA	b.88.1.2	60692
1jo8A	58	3.22e+01		b.34.2.1	71774
1etxA	98	3.25e+01	1fipA	unknown_sccs	18978
1kveB	77	3.34e+01	1kveB		
1ia9A	280	3.64e+01	1ia9A	d.144.1.5	62113
2occJ	59	3.72e+01	2occJ	f.23.4.1	43524
1c3gA	170	3.86e+01	1c3gA	b.4.1.1	22831
				b.4.1.1	22832
1jggA	60	3.88e+01	2hddA	a.4.1.1	62950
1fcdA	401	3.89e+01	1fcdA	c.3.1.5	30593
				c.3.1.5	30594
				d.87.1.1	40218
1v54J	59	3.93e+01		f.23.4.1	-12112
1rec	201	3.99e+01	1rec	a.39.1.5	17326