# List of top-scoring protein chains for T0232.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1iyhA 198 8.61e-03 a.45.1.1 83790 c.47.1.5 83791 1pd21 199 1.05e-02 1pd21 1gulA 222 1.15e-02 1pgtA a.45.1.1 17675 c.47.1.5 32969 1fhe 217 1.36e-02 1b8xA a.45.1.1 17726 c.47.1.5 33020 1glqA 209 1.82e-01 1pgtA a.45.1.1 17588 c.47.1.5 32882 1ev4A 221 2.31e-01 1pgtA a.45.1.1 17693 c.47.1.5 32987 1ev9A 221 2.33e-01 1pgtA a.45.1.1 17696 c.47.1.5 32990 1r2rA 248 2.77e-01 c.1.1.1 -5147 1oktA 211 2.86e-01 a.45.1.1 -942 c.47.1.5 -7467 1f3aA 222 3.00e-01 1pgtA a.45.1.1 17701 c.47.1.5 32995 2gsrA 207 3.41e-01 1pgtA a.45.1.1 17586 c.47.1.5 32880 1mtcA 217 3.83e-01 a.45.1.1 85103 c.47.1.5 85104 6gsvA 217 4.27e-01 1b8xA a.45.1.1 17633 c.47.1.5 32925 1ml6A 221 4.29e-01 a.45.1.1 85009 c.47.1.5 85010 6gsuA 217 4.48e-01 1b8xA a.45.1.1 17635 c.47.1.5 32929 2gstA 217 5.80e-01 1b8xA a.45.1.1 17629 c.47.1.5 32923 4gtuA 217 6.69e-01 1b8xA a.45.1.1 17621 c.47.1.5 32915 6gswA 217 7.85e-01 1b8xA a.45.1.1 17631 c.47.1.5 32927 22gsA 210 8.20e-01 1pgtA a.45.1.1 17542 c.47.1.5 32836 1ezfA 340 8.70e-01 1ezfA a.128.1.2 19440 17gsA 210 8.88e-01 1pgtA a.45.1.1 17524 c.47.1.5 32818 1htiA 248 9.47e-01 1amk c.1.1.1 28455 6gsxA 217 1.13e+00 1b8xA a.45.1.1 17641 c.47.1.5 32935 1eohA 209 1.48e+00 1pgtA a.45.1.1 17574 c.47.1.5 32868 1dwaM 499 1.51e+00 1e70M c.1.8.4 28928 1e4mM 501 1.51e+00 1e70M c.1.8.4 59226 1oi4A 193 1.62e+00 c.23.16.2 87047 18gsA 210 1.71e+00 1pgtA a.45.1.1 17528 c.47.1.5 32822 1pgtA 210 1.76e+00 1pgtA a.45.1.1 17515 c.47.1.5 32809 1gukA 222 1.79e+00 1pgtA a.45.1.1 17705 c.47.1.5 32999 1px7A 209 1.82e+00 a.45.1.1 88337 c.47.1.5 88338 1myr 501 1.83e+00 1e70M c.1.8.4 28925 1b48A 221 1.85e+00 1pgtA a.45.1.1 17703 c.47.1.5 32997 1px6A 209 1.87e+00 a.45.1.1 88333 c.47.1.5 88334 2gsq 202 1.99e+00 1pd21 a.45.1.1 17715 c.47.1.5 33009 3gtuB 224 2.08e+00 1b8xA a.45.1.1 17612 c.47.1.5 32906 1p8jA 471 2.37e+00 b.18.1.20 87946 c.41.1.1 87947 1kbnA 209 2.42e+00 a.45.1.1 -926 c.47.1.5 -7451 1eogA 208 2.83e+00 1pgtA a.45.1.1 17560 c.47.1.5 32854 1b4pA 217 3.06e+00 a.45.1.1 83158 c.47.1.5 83159 1aqwA 209 3.25e+00 1pgtA a.45.1.1 17517 c.47.1.5 32811 1md4A 209 3.26e+00 a.45.1.1 74632 c.47.1.5 74633 1qtwA 285 3.40e+00 1qumA c.1.15.1 29392 1md3A 209 3.55e+00 a.45.1.1 74628 c.47.1.5 74629 1lbkA 208 3.85e+00 a.45.1.1 73809 c.47.1.5 73810 4gssA 209 3.91e+00 1pgtA a.45.1.1 17570 c.47.1.5 32864 1lv0A 449 4.09e+00 c.3.1.3 -6038 d.16.1.6 -9258 1gnd 447 4.10e+00 1gnd c.3.1.3 30423 d.16.1.6 37987 1pl1A 222 4.55e+00 1k3yA 221 4.70e+00 a.45.1.1 77245 c.47.1.5 77246 2fheA 216 4.77e+00 1b8xA a.45.1.1 17724 c.47.1.5 33018 1gtuA 217 4.90e+00 1b8xA a.45.1.1 17607 c.47.1.5 32901 1du5A 206 4.99e+00 1thv b.25.1.1 23901 1pl2A 222 5.57e+00 1l2lA 457 5.65e+00 c.72.1.3 77656 1nypA 66 5.75e+00 g.39.1.3 86411 g.39.1.3 86412 1msk 331 6.01e+00 1msk d.173.1.1 42495 1augA 215 6.43e+00 1a2zA c.56.4.1 33798 1d5tA 433 6.45e+00 1gnd c.3.1.3 30422 d.16.1.6 37986 1m7zA 361 7.26e+00 d.174.1.1 78762 1agsA 221 7.96e+00 1pgtA a.45.1.1 17691 c.47.1.5 32985 1gseA 221 1.06e+01 1pgtA a.45.1.1 17667 c.47.1.5 32961 1npeA 267 1.24e+01 b.68.5.1 -4588 1div 149 1.25e+01 1div d.99.1.1 40692 d.100.1.1 40693 1fp2A 352 1.46e+01 1fpxA a.4.5.29 59941 c.66.1.12 59942 1fxxA 482 1.48e+01 1fxxA c.55.3.5 33726 1m5hA 297 1.50e+01 d.58.33.1 74493 d.58.33.1 74494 1nowA 507 1.76e+01 c.1.8.6 85936 d.92.2.1 85937 1o7aA 515 1.78e+01 c.1.8.6 -5408 d.92.2.1 -10589 1n82A 331 1.83e+01 c.1.8.3 -5306 1frfL 564 1.83e+01 1h2rL e.18.1.1 43300 1nhzA 280 1.86e+01 a.123.1.1 85727 1gx2A 309 1.93e+01 a.93.1.1 83360 1kk8C 154 2.01e+01 a.39.1.5 77431 1wdcC 156 2.02e+01 1wdcC a.39.1.5 17317 1scmC 149 2.02e+01 1wdcC a.39.1.5 17319 1dflX 152 2.03e+01 1wdcC a.39.1.5 17321 1k2yX 463 2.04e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1m9aA 218 2.13e+01 a.45.1.1 84882 c.47.1.5 84883 1dugA 234 2.19e+01 1b8xA a.45.1.1 17718 c.47.1.5 33012 1bg5 254 2.20e+01 1b8xA a.45.1.1 17723 c.47.1.5 33017 1p5dX 463 2.23e+01 c.84.1.1 -8554 c.84.1.1 -8555 c.84.1.1 -8556 d.129.2.1 -11029 1fzdA 201 2.24e+01 3fib d.171.1.1 42484 1ky8A 501 2.26e+01 c.82.1.1 77628 1gne 232 2.27e+01 1b8xA a.45.1.1 17721 c.47.1.5 33015 1c8sA 196 2.33e+01 1c3wA f.13.1.1 43410 1aun 208 2.34e+01 1thv b.25.1.1 23900 1al8 359 2.35e+01 1gox c.1.4.1 28608 1gox 370 2.40e+01 1gox c.1.4.1 28607 1ne2A 200 2.41e+01 c.66.1.32 85586 1gylA 369 2.41e+01 1gox c.1.4.1 28610 1omzA 293 2.45e+01 c.68.1.15 87093 1mc8A 343 2.45e+01 a.60.7.1 78945 c.120.1.2 78946 1jv2B 692 2.46e+01 b.1.15.1 67338 c.62.1.1 67339 d.200.1.1 67340 g.3.11.6 67341 g.3.11.6 67342 1m2zA 257 2.50e+01 a.123.1.1 84768 1eh2 106 2.50e+01 1eh2 a.39.1.6 17339 1q5jA 249 2.53e+01 f.13.1.1 -12075 1f46A 140 2.54e+01 1f46A d.129.4.1 59643 1c3wA 222 2.61e+01 1c3wA f.13.1.1 43405 1f47B 144 2.68e+01 1f46A d.129.4.1 59645 1ny1A 240 2.71e+01 c.6.2.3 86395 1b8xA 280 2.79e+01 1b8xA a.45.1.1 17739 c.47.1.5 33033 1f8hA 95 2.87e+01 1eh2 a.39.1.6 17336 1kid 203 2.90e+01 1derA c.8.5.1 30771 1izcA 339 2.91e+01 c.1.12.5 83838 1jb0L 154 2.94e+01 1jb0L f.31.1.1 62829 1k7yA 577 2.96e+01 a.46.1.1 68272 c.23.6.1 68273 d.173.1.1 68274 1s54A 227 3.00e+01 f.13.1.1 -12083 1s53A 227 3.08e+01 f.13.1.1 -12081 1m7vA 363 3.11e+01 d.174.1.1 78748 1i6vA 314 3.11e+01 d.74.3.1 61852 d.181.1.1 61853 1jl5A 454 3.12e+01 c.10.2.6 66830 1s52A 227 3.13e+01 f.13.1.1 -12079 1rt8A 513 3.16e+01 1vc4A 254 3.21e+01 c.1.2.4 -5172 1inp 400 3.22e+01 1inp e.7.1.1 42972 1la1A 192 3.24e+01 c.8.5.1 73772 1qcwA 410 3.29e+01 1gox c.1.4.1 28622 1iw7A 315 3.30e+01 d.74.3.1 71470 d.181.1.1 71471 1kbjA 412 3.31e+01 c.1.4.1 72280 1f7wA 144 3.33e+01 1f46A d.129.4.1 59679 1iu8A 206 3.35e+01 c.56.4.1 71436 1f9aA 168 3.36e+01 1f9aA c.26.1.3 31602 1l0mA 212 3.38e+01 f.13.1.1 73402 1s51A 227 3.50e+01 f.13.1.1 -12077 1f50A 227 3.51e+01 1c3wA f.13.1.1 43406 1e0pA 228 3.52e+01 1c3wA f.13.1.1 43416 1kzmA 308 3.53e+01 a.93.1.1 77637 1kgbA 231 3.53e+01 f.13.1.1 68581 1r84A 232 3.54e+01 f.13.1.1 -12064 1m0uA 249 3.55e+01 a.45.1.1 78359 c.47.1.5 78360 1hchA 306 3.56e+01 a.93.1.1 70965 1lroA 267 3.56e+01 c.1.10.4 78161 7atjA 308 3.56e+01 1bgp a.93.1.1 18673 4atjA 309 3.56e+01 a.93.1.1 81266 1oe8A 211 3.56e+01 a.45.1.1 86905 c.47.1.5 86906 2atjA 308 3.58e+01 1bgp a.93.1.1 18675 1f2eA 201 3.59e+01 1a0fA a.45.1.1 17745 c.47.1.5 33039 1p8uA 249 3.62e+01 f.13.1.1 87983 1l0lK 56 3.67e+01 f.23.15.1 84497 1brrA 247 3.67e+01 1c3wA f.13.1.1 43421 1cwqA 248 3.67e+01 1c3wA f.13.1.1 43412 1q5iA 249 3.73e+01 f.13.1.1 -12073 1qhjA 248 3.77e+01 1c3wA f.13.1.1 43409 1p8hA 249 3.77e+01 f.13.1.1 87944 1ltdA 506 3.78e+01 1gox c.1.4.1 28618 d.120.1.1 41086 1mgyA 249 3.78e+01 f.13.1.1 84959 1kbiA 511 3.80e+01 c.1.4.1 72277 d.120.1.1 72278 1nos 388 3.81e+01 1nseA d.174.1.1 42496 1dd7A 389 3.81e+01 1nseA d.174.1.1 42497 1p8iA 249 3.84e+01 f.13.1.1 87945 1m0kA 262 3.85e+01 f.13.1.1 78344 1lcoA 511 3.86e+01 1gox c.1.4.1 28624 d.120.1.1 41088 1c8rA 249 3.87e+01 1c3wA f.13.1.1 43407 1l9uA 314 3.87e+01 i.8.1.1 73748 1jv6A 249 3.89e+01 f.13.1.1 67346 1pxsA 249 3.89e+01 f.13.1.1 -12067 1nwwA 149 3.94e+01 d.17.4.8 86306 1nu3A 149 3.94e+01 d.17.4.8 86170 1mgrA 99 3.95e+01 d.1.1.2 79106 1pxrA 249 3.99e+01 f.13.1.1 -12065 1jwkA 434 4.00e+01 d.174.1.1 67387