# List of top-scoring protein chains for T0232.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1aw9 216 1.35e-24 1gnwA a.45.1.1 17736 c.47.1.5 33030 1gwcA 230 1.77e-24 a.45.1.1 70660 c.47.1.5 70661 1e6bA 221 5.10e-23 1e6bA a.45.1.1 59294 c.47.1.5 59295 1jlvA 209 8.93e-23 a.45.1.1 71729 c.47.1.5 71730 1pn9A 209 2.35e-22 a.45.1.1 -936 c.47.1.5 -7461 1fw1A 216 8.28e-22 a.45.1.1 60051 c.47.1.5 60052 1byeA 213 3.14e-21 1gnwA a.45.1.1 17732 c.47.1.5 33026 1eemA 241 3.17e-21 1eemA a.45.1.1 17717 c.47.1.5 33011 1axdA 209 3.78e-21 1gnwA a.45.1.1 17730 c.47.1.5 33024 1oyjA 231 7.50e-21 a.45.1.1 87597 c.47.1.5 87598 1jlwA 219 1.28e-20 a.45.1.1 71741 c.47.1.5 71742 2ljrA 244 1.34e-20 1ljrA a.45.1.1 17709 c.47.1.5 33003 1fhe 217 1.65e-20 1b8xA a.45.1.1 17726 c.47.1.5 33020 6gsvA 217 2.92e-20 1b8xA a.45.1.1 17633 c.47.1.5 32925 6gsuA 217 3.77e-20 1b8xA a.45.1.1 17635 c.47.1.5 32929 6gswA 217 4.25e-20 1b8xA a.45.1.1 17631 c.47.1.5 32927 2gstA 217 5.43e-20 1b8xA a.45.1.1 17629 c.47.1.5 32923 1n2aA 201 5.62e-20 a.45.1.1 -938 c.47.1.5 -7463 1mtcA 217 6.35e-20 a.45.1.1 85103 c.47.1.5 85104 1b4pA 217 7.35e-20 a.45.1.1 83158 c.47.1.5 83159 1gnwA 211 8.48e-20 1gnwA a.45.1.1 17727 c.47.1.5 33021 6gsxA 217 1.21e-19 1b8xA a.45.1.1 17641 c.47.1.5 32935 1pmt 203 1.21e-19 1a0fA a.45.1.1 17740 c.47.1.5 33034 4gtuA 217 1.33e-19 1b8xA a.45.1.1 17621 c.47.1.5 32915 1gtuA 217 1.42e-19 1b8xA a.45.1.1 17607 c.47.1.5 32901 1f2eA 201 2.26e-19 1a0fA a.45.1.1 17745 c.47.1.5 33039 2gsrA 207 2.88e-19 1pgtA a.45.1.1 17586 c.47.1.5 32880 1hqoA 258 3.05e-19 1hqoA a.45.1.1 17749 c.47.1.5 33043 1k0dA 260 3.06e-19 a.45.1.1 67930 c.47.1.5 67931 1g6wA 261 3.07e-19 1hqoA a.45.1.1 17751 c.47.1.5 33045 2gtuA 217 3.12e-19 1b8xA a.45.1.1 17605 c.47.1.5 32899 1hna 217 3.13e-19 1b8xA a.45.1.1 17604 c.47.1.5 32898 1r5aA 218 3.41e-19 a.45.1.1 -929 c.47.1.5 -7454 17gsA 210 3.64e-19 1pgtA a.45.1.1 17524 c.47.1.5 32818 1glqA 209 4.94e-19 1pgtA a.45.1.1 17588 c.47.1.5 32882 22gsA 210 5.97e-19 1pgtA a.45.1.1 17542 c.47.1.5 32836 1pgtA 210 7.46e-19 1pgtA a.45.1.1 17515 c.47.1.5 32809 18gsA 210 7.83e-19 1pgtA a.45.1.1 17528 c.47.1.5 32822 1f3aA 222 8.90e-19 1pgtA a.45.1.1 17701 c.47.1.5 32995 1gukA 222 1.18e-18 1pgtA a.45.1.1 17705 c.47.1.5 32999 1b48A 221 1.41e-18 1pgtA a.45.1.1 17703 c.47.1.5 32997 4gssA 209 1.73e-18 1pgtA a.45.1.1 17570 c.47.1.5 32864 1aqwA 209 1.81e-18 1pgtA a.45.1.1 17517 c.47.1.5 32811 1lbkA 208 2.00e-18 a.45.1.1 73809 c.47.1.5 73810 1ev9A 221 2.15e-18 1pgtA a.45.1.1 17696 c.47.1.5 32990 1pl1A 222 2.17e-18 1ev4A 221 2.25e-18 1pgtA a.45.1.1 17693 c.47.1.5 32987 1v2aA 210 2.37e-18 a.45.1.1 -931 c.47.1.5 -7456 1k3yA 221 2.61e-18 a.45.1.1 77245 c.47.1.5 77246 2fheA 216 3.17e-18 1b8xA a.45.1.1 17724 c.47.1.5 33018 1kbnA 209 4.03e-18 a.45.1.1 -926 c.47.1.5 -7451 1ml6A 221 4.11e-18 a.45.1.1 85009 c.47.1.5 85010 3gtuB 224 4.32e-18 1b8xA a.45.1.1 17612 c.47.1.5 32906 1pl2A 222 4.58e-18 1gseA 221 5.48e-18 1pgtA a.45.1.1 17667 c.47.1.5 32961 1gulA 222 5.65e-18 1pgtA a.45.1.1 17675 c.47.1.5 32969 1px7A 209 6.71e-18 a.45.1.1 88337 c.47.1.5 88338 1px6A 209 8.19e-18 a.45.1.1 88333 c.47.1.5 88334 1eogA 208 8.31e-18 1pgtA a.45.1.1 17560 c.47.1.5 32854 1md3A 209 8.53e-18 a.45.1.1 74628 c.47.1.5 74629 1agsA 221 1.24e-17 1pgtA a.45.1.1 17691 c.47.1.5 32985 1m9aA 218 1.46e-17 a.45.1.1 84882 c.47.1.5 84883 1pd21 199 1.50e-17 1pd21 1eohA 209 1.50e-17 1pgtA a.45.1.1 17574 c.47.1.5 32868 2gsq 202 1.59e-17 1pd21 a.45.1.1 17715 c.47.1.5 33009 1iyhA 198 1.60e-17 a.45.1.1 83790 c.47.1.5 83791 1bg5 254 1.76e-17 1b8xA a.45.1.1 17723 c.47.1.5 33017 1dugA 234 2.05e-17 1b8xA a.45.1.1 17718 c.47.1.5 33012 1md4A 209 2.16e-17 a.45.1.1 74632 c.47.1.5 74633 1gne 232 2.32e-17 1b8xA a.45.1.1 17721 c.47.1.5 33015 1b8xA 280 2.44e-17 1b8xA a.45.1.1 17739 c.47.1.5 33033 1gsuA 219 3.76e-17 1b8xA a.45.1.1 17661 c.47.1.5 32955 1c72A 219 6.75e-17 1b8xA a.45.1.1 17663 c.47.1.5 32957 1m0uA 249 7.46e-16 a.45.1.1 78359 c.47.1.5 78360 1oktA 211 1.58e-15 a.45.1.1 -942 c.47.1.5 -7467 1k0mA 241 1.74e-14 a.45.1.1 67949 c.47.1.5 67950 1oe8A 211 2.13e-14 a.45.1.1 86905 c.47.1.5 86906 1rk4A 243 2.20e-14 a.45.1.1 -948 c.47.1.5 -7473 1nhyA 219 3.59e-12 a.45.1.1 80520 c.47.1.5 80521 1g7oA 215 2.32e-09 1g7oA a.45.1.1 60332 c.47.1.5 60333 1fovA 82 7.57e-03 1qfnA c.47.1.1 32770 3grx 82 1.25e-02 1aba c.47.1.1 32769 1a6dB 543 3.15e-01 1a6dA a.129.1.2 19489 c.8.5.2 30820 d.56.1.2 38937 1r7hA 75 3.52e-01 c.47.1.1 -7404 1h75A 81 4.10e-01 1h75A c.47.1.1 60716 1nm3A 241 4.19e-01 c.47.1.1 85866 c.47.1.10 85867 1oy5A 257 1.19e+00 c.116.1.4 -6699 4enl 436 1.90e+00 4enl c.1.11.1 29202 d.54.1.1 38846 1oneA 436 1.98e+00 4enl c.1.11.1 29200 d.54.1.1 38844 1l8pA 436 2.00e+00 c.1.11.1 73692 d.54.1.1 73693 1p43A 436 2.10e+00 c.1.11.1 -5559 d.54.1.1 -9817 1p48A 436 2.26e+00 c.1.11.1 -5561 d.54.1.1 -9819 1jhb 106 5.28e+00 1kte c.47.1.1 32772 1b4qA 105 5.52e+00 1kte c.47.1.1 32773 1rniA 216 5.54e+00 unknown_sccs -11389 1kte 105 5.72e+00 1kte c.47.1.1 32771 1gwjA 377 5.77e+00 c.1.4.1 70671 1lldA 319 5.94e+00 3ldh c.2.1.5 30177 d.162.1.1 42144 1o4vA 183 6.11e+00 c.23.8.1 86628 1ro2A 216 6.63e+00 unknown_sccs -11391 1f20A 435 6.81e+00 b.43.4.1 64932 c.25.1.4 64933 1cjmA 295 8.79e+00 1aquA c.37.1.5 31950 1kf6A 602 8.93e+00 a.7.3.1 72394 c.3.1.4 72395 d.168.1.1 72396 1us5A 314 9.41e+00 c.94.1.1 -8686 1fjrA 195 9.86e+00 1fjrA b.102.1.1 59855 1jykA 254 1.09e+01 c.68.1.13 67458 1a6dA 545 1.29e+01 1a6dA a.129.1.2 19488 c.8.5.2 30819 d.56.1.2 38936 1emrA 159 1.40e+01 1lki a.26.1.1 59456 1gveA 327 1.54e+01 c.1.7.1 70597 1nx8A 273 1.55e+01 b.82.2.8 86374 1pvhB 169 1.61e+01 a.26.1.1 -709 1rcjA 265 1.66e+01 e.3.1.1 -11762 1hh2P 344 1.66e+01 b.40.4.5 65835 d.52.3.1 65836 d.52.3.1 65837 d.202.1.1 65838 1j09A 468 1.76e+01 a.97.1.1 77025 c.26.1.1 77026 1hx8A 299 1.80e+01 1hg5A unknown_sccs -405 unknown_sccs -1634 2ffhA 425 1.89e+01 1ng1 a.24.13.1 16965 a.36.1.1 17122 c.37.1.10 32276 1gd1O 334 1.97e+01 1dssG c.2.1.3 29962 d.81.1.1 39877 1nqoA 334 1.98e+01 c.2.1.3 86044 d.81.1.1 86045 1nptO 334 1.98e+01 c.2.1.3 85987 d.81.1.1 85988 1qydA 313 1.99e+01 c.2.1.2 -5786 1l2fA 369 2.02e+01 b.40.4.5 -3933 d.52.3.1 -9777 d.52.3.1 -9778 d.202.1.1 -9816 1mpyA 307 2.02e+01 1mpyA d.32.1.3 38508 d.32.1.3 38509 1g59A 468 2.04e+01 a.97.1.1 60257 c.26.1.1 60258 1hyuA 521 2.04e+01 1hyuA c.3.1.5 30547 c.3.1.5 30548 c.47.1.2 32779 c.47.1.2 32780 1gpmA 525 2.10e+01 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 1kn9A 249 2.11e+01 b.87.1.2 68699 1csc 429 2.12e+01 1csh a.103.1.1 18886 1b12A 248 2.14e+01 1b12A b.87.1.2 28388 2dbvO 334 2.16e+01 1dssG c.2.1.3 29970 d.81.1.1 39885 1n9bA 265 2.19e+01 e.3.1.1 85463 1ongA 265 2.21e+01 e.3.1.1 -11761 1s3eA 520 2.32e+01 c.3.1.2 -6022 d.16.1.5 -9242 1iysA 262 2.36e+01 e.3.1.1 -11760 1iyoA 262 2.40e+01 e.3.1.1 76970 1s1iJ 173 2.40e+01 1v47A 349 2.43e+01 b.122.1.3 -5127 c.26.1.5 -6622 1qmhA 347 2.57e+01 1qmhA c.47.2.1 33082 d.68.2.1 39568 1kpiA 302 2.74e+01 c.66.1.18 68743 1ako 268 2.75e+01 1ako d.151.1.1 41779 1d5aA 733 2.79e+01 1tgoA c.55.3.5 33723 e.8.1.1 43012 3dbvO 334 2.84e+01 1dssG c.2.1.3 29982 d.81.1.1 39897 1ftrA 296 2.94e+01 1ftrA d.58.33.1 39485 d.58.33.1 39486 1qzxA 440 2.95e+01 a.24.13.1 -628 a.36.1.1 -801 c.37.1.10 -7126 1hf8A 289 2.96e+01 1hg5A unknown_sccs -399 unknown_sccs -1628 1fo5A 85 3.20e+01 1fo5A c.47.1.1 59922 1gs0A 351 3.23e+01 a.41.1.1 76323 d.166.1.2 76324 1rh5A 436 3.31e+01 unknown_sccs -12298 1m15A 357 3.33e+01 a.83.1.1 78368 d.128.1.2 78369 1uch 230 3.37e+01 1uch d.3.1.6 37129 1bg0 356 3.37e+01 1qh4A a.83.1.1 18476 d.128.1.2 41211 1pw4A 451 3.39e+01 unknown_sccs -12259 2crkA 381 3.40e+01 1qh4A a.83.1.1 18474 d.128.1.2 41209 1p50A 356 3.44e+01 a.83.1.1 87786 d.128.1.2 87787 1efpB 252 3.45e+01 1efvB c.26.2.3 31636 3pcdM 238 3.49e+01 3pchM b.3.6.1 22778 1ego 85 3.52e+01 1kte c.47.1.1 32767 1iqrA 420 3.59e+01 a.99.1.1 66275 c.28.1.1 66276 1m1cA 680 3.65e+01 e.42.1.1 78395 1vhnA 318 3.69e+01 c.1.4.1 -5209 1ldfA 281 3.71e+01 f.19.1.1 73845 1wdnA 226 3.79e+01 1lst c.94.1.1 35816 1nu5A 370 3.81e+01 c.1.11.2 -5565 d.54.1.1 -9823 1mzpA 217 3.87e+01 e.24.1.1 79710 1ldm 329 3.89e+01 3ldh c.2.1.5 30160 d.162.1.1 42127 1k0eA 453 3.94e+01 d.161.1.1 67938 6ldh 330 3.96e+01 3ldh c.2.1.5 30161 d.162.1.1 42128 1k32A 1045 3.98e+01 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071