# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jlvA 209 1.64e-22 a.45.1.1 71729 c.47.1.5 71730 1fw1A 216 1.99e-22 a.45.1.1 60051 c.47.1.5 60052 1e6bA 221 2.48e-22 1e6bA a.45.1.1 59294 c.47.1.5 59295 1eemA 241 2.80e-22 1eemA a.45.1.1 17717 c.47.1.5 33011 1axdA 209 1.55e-21 1gnwA a.45.1.1 17730 c.47.1.5 33024 6gsvA 217 2.18e-21 1b8xA a.45.1.1 17633 c.47.1.5 32925 1oyjA 231 2.65e-21 a.45.1.1 87597 c.47.1.5 87598 1b4pA 217 2.89e-21 a.45.1.1 83158 c.47.1.5 83159 1gnwA 211 6.73e-21 1gnwA a.45.1.1 17727 c.47.1.5 33021 1n2aA 201 8.95e-21 a.45.1.1 -938 c.47.1.5 -7463 1a0fA 201 1.21e-20 1a0fA a.45.1.1 17737 c.47.1.5 33031 1k0dA 260 3.01e-20 a.45.1.1 67930 c.47.1.5 67931 1f2eA 201 3.70e-20 1a0fA a.45.1.1 17745 c.47.1.5 33039 1f3aA 222 9.70e-20 1pgtA a.45.1.1 17701 c.47.1.5 32995 1pgtA 210 1.03e-19 1pgtA a.45.1.1 17515 c.47.1.5 32809 1dugA 234 1.87e-19 1b8xA a.45.1.1 17718 c.47.1.5 33012 1iyhA 198 8.32e-19 a.45.1.1 83790 c.47.1.5 83791 2gsq 202 8.75e-19 1pd21 a.45.1.1 17715 c.47.1.5 33009 1k3yA 221 1.36e-18 a.45.1.1 77245 c.47.1.5 77246 1pd21 199 3.28e-18 1pd21 1m0uA 249 2.93e-17 a.45.1.1 78359 c.47.1.5 78360 1oktA 211 3.72e-17 a.45.1.1 -942 c.47.1.5 -7467 1oe8A 211 5.28e-16 a.45.1.1 86905 c.47.1.5 86906 1k0mA 241 1.41e-15 a.45.1.1 67949 c.47.1.5 67950 1nhyA 219 2.31e-13 a.45.1.1 80520 c.47.1.5 80521 1g7oA 215 2.82e-12 1g7oA a.45.1.1 60332 c.47.1.5 60333 1h75A 81 7.26e-03 1h75A c.47.1.1 60716 1lldA 319 8.14e-02 3ldh c.2.1.5 30177 d.162.1.1 42144 1kte 105 9.15e-02 1kte c.47.1.1 32771 1gpmA 525 1.18e-01 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 1f20A 435 1.51e-01 b.43.4.1 64932 c.25.1.4 64933 1aba 87 5.14e-01 1aba c.47.1.1 32760 1aj8A 371 5.22e-01 1aj8A a.103.1.1 18900 1iy8A 267 5.47e-01 c.2.1.2 83774 1riqA 465 5.68e-01 unknown_sccs -1295 d.104.1.1 -10769 1guzA 310 6.25e-01 c.2.1.5 65586 d.162.1.1 65587 1grx 85 9.79e-01 1kte c.47.1.1 32766 1mzjA 339 1.11e+00 c.95.1.1 79700 c.95.1.1 79701 1q7bA 244 1.36e+00 c.2.1.2 -5826 1nw2A 105 1.67e+00 c.47.1.1 -7380 1j9lA 247 1.71e+00 c.106.1.1 62762 1b16A 254 1.99e+00 1b16A c.2.1.2 29875 1kewA 361 2.05e+00 c.2.1.2 68544 1p7tA 731 2.18e+00 c.1.13.1 -5600 1o4vA 183 2.27e+00 c.23.8.1 86628 1thx 115 2.27e+00 1thx c.47.1.1 32732 1vhnA 318 2.29e+00 c.1.4.1 -5209 1sxjE 354 2.90e+00 1ha3A 405 3.13e+00 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 1gln 468 3.14e+00 1gln a.97.1.1 18752 c.26.1.1 31588 1exmA 405 3.22e+00 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1j0fA 100 3.35e+00 unknown_sccs -7483 1l5xA 280 3.42e+00 c.106.1.1 77718 1sur 215 3.52e+00 1sur c.26.2.2 31620 1ako 268 3.56e+00 1ako d.151.1.1 41779 1ek1A 554 3.57e+00 1cr6B c.108.1.2 43335 c.69.1.11 34685 1d8cA 723 3.59e+00 1d8cA c.1.13.1 29325 1pfvA 551 3.67e+00 a.27.1.1 -727 c.26.1.1 -6603 g.41.1.1 -12765 1ab4 477 3.72e+00 1ab4 e.11.1.1 43251 1gveA 327 3.80e+00 c.1.7.1 70597 1ro2A 216 3.97e+00 unknown_sccs -11391 1pjqA 457 4.02e+00 c.2.1.11 -5904 c.90.1.1 -8611 e.37.1.1 -12004 1t1vA 93 4.09e+00 1uch 230 4.24e+00 1uch d.3.1.6 37129 1f4lA 551 4.25e+00 1qqtA a.27.1.1 59648 c.26.1.1 59649 g.41.1.1 59650 6ldh 330 4.26e+00 3ldh c.2.1.5 30161 d.162.1.1 42128 1ro0A 216 4.34e+00 unknown_sccs -11390 1j09A 468 4.45e+00 a.97.1.1 77025 c.26.1.1 77026 1iqrA 420 4.66e+00 a.99.1.1 66275 c.28.1.1 66276 1k0eA 453 4.75e+00 d.161.1.1 67938 1eq2A 310 4.75e+00 1eq2A c.2.1.2 29814 3tmkA 216 4.82e+00 3tmkA c.37.1.1 31920 1qydA 313 4.85e+00 c.2.1.2 -5786 1dbqA 289 5.03e+00 1qpzA c.93.1.1 35666 1nu0A 138 5.09e+00 unknown_sccs -7658 1gggA 226 5.11e+00 1lst c.94.1.1 35817 3cox 507 5.36e+00 1b8sA c.3.1.2 30332 d.16.1.1 37863 2fha 183 5.38e+00 2fha a.25.1.1 16674 1iloA 77 5.78e+00 c.47.1.1 66205 1qmhA 347 5.82e+00 1qmhA c.47.2.1 33082 d.68.2.1 39568 1mdoA 393 5.83e+00 c.67.1.4 79013 1wdnA 226 5.86e+00 1lst c.94.1.1 35816 1orrA 347 6.15e+00 c.2.1.2 -5776 1omzA 293 6.25e+00 c.68.1.15 87093 1eg5A 384 6.26e+00 1ecxA c.67.1.3 34429 1db3A 372 6.39e+00 1db3A c.2.1.2 29813 1avqA 228 6.43e+00 1avqA c.52.1.13 33326 1dosA 358 6.55e+00 1dosA c.1.10.2 29175 1jfuA 186 6.89e+00 c.47.1.10 62940 1kz7A 353 7.37e+00 a.87.1.1 73333 b.55.1.1 73334 1mwmA 320 7.75e+00 c.55.1.1 79580 c.55.1.1 79581 1lzlA 323 7.76e+00 c.69.1.2 78306 1mkmA 249 8.37e+00 a.4.5.33 79242 d.110.2.2 79243 1gox 370 8.51e+00 1gox c.1.4.1 28607 1o2dA 371 8.86e+00 e.22.1.2 86591 1bpoA 494 9.04e+00 1bpoA a.118.1.4 19143 b.69.6.1 27670 1kyqA 274 9.06e+00 c.2.1.11 73281 e.37.1.1 73282 1c9kA 180 9.18e+00 1c9kB c.37.1.11 32363 1p0kA 349 9.35e+00 c.1.4.1 87648 1e2kA 331 9.45e+00 1qhiA c.37.1.1 31854 1a8l 226 9.46e+00 1a8l c.47.1.2 32777 c.47.1.2 32778 1v4vA 376 9.47e+00 c.87.1.3 -8583 1o6yA 299 9.84e+00 d.144.1.7 81106 1q0sA 259 9.94e+00 c.66.1.28 -8110 1jvsA 400 1.04e+01 a.69.3.1 77187 c.2.1.3 77188 d.81.1.3 77189 1bs0A 384 1.04e+01 1bs0A c.67.1.4 34490 1d0yA 761 1.06e+01 1lvk b.34.3.1 24581 c.37.1.9 32178 1oe4A 247 1.07e+01 c.18.1.3 86895 1kekA 1231 1.08e+01 c.36.1.8 68524 c.36.1.12 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1xo1A 291 1.09e+01 1exnA a.60.7.1 18086 c.120.1.2 33356 1b0pA 1231 1.10e+01 c.36.1.8 31831 c.36.1.12 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1fi4A 416 1.10e+01 1fi4A d.14.1.5 59847 d.58.26.2 59848 1i5gA 144 1.12e+01 1ewxA c.47.1.10 61784 2gsaA 432 1.14e+01 2gsaA c.67.1.4 34446 3thiA 371 1.14e+01 2thiA c.94.1.1 35792 1j08A 226 1.17e+01 c.47.1.2 83855 c.47.1.2 83856 1qh8A 478 1.20e+01 1qguA c.92.2.3 35633 2reb 352 1.22e+01 2reb c.37.1.11 32282 d.48.1.1 38767 1n8fA 350 1.25e+01 c.1.10.4 85397 1kqfC 217 1.28e+01 f.21.1.1 72874 1vjzA 341 1.31e+01 c.1.8.3 -5318 1b8gA 429 1.36e+01 1b8gA c.67.1.4 34499 1h4pA 408 1.38e+01 c.1.8.3 -5314 1c0pA 363 1.38e+01 1an9A c.4.1.2 30647 d.16.1.3 37934 1oneA 436 1.41e+01 4enl c.1.11.1 29200 d.54.1.1 38844 4enl 436 1.41e+01 4enl c.1.11.1 29202 d.54.1.1 38846 1e79D 482 1.42e+01 1skyE a.69.1.1 18272 b.49.1.1 26437 c.37.1.11 32317 1vicA 262 1.46e+01 c.68.1.13 -8252 1ituA 369 1.52e+01 c.1.9.7 71423 2sqcA 631 1.54e+01 2sqcA a.102.4.2 18854 a.102.4.2 18855 1brt 277 1.55e+01 1brt c.69.1.12 34699 1si2A 149 1.55e+01 1m7yA 435 1.56e+01 c.67.1.4 78761 1n4kA 381 1.58e+01 unknown_sccs 79992 b.42.6.1 79993 1s3eA 520 1.58e+01 c.3.1.2 -6022 d.16.1.5 -9242 1ngvA 534 1.59e+01 c.111.1.2 85698 1qv9A 283 1.59e+01 unknown_sccs -6888 1fiqC 763 1.59e+01 1fiqC d.41.1.1 38588 d.133.1.1 41418 1kngA 156 1.62e+01 c.47.1.10 72777 1nzeA 149 1.64e+01 unknown_sccs -599 1rf6A 427 1.64e+01 d.68.2.2 -10314 1c7sA 858 1.65e+01 1qba b.1.18.2 21812 b.2.2.3 22408 c.1.8.6 29011 d.92.2.1 40410 1v7rA 186 1.66e+01 c.51.4.1 -7546 2ak3A 226 1.68e+01 1zin c.37.1.1 31892 g.41.2.1 45193 1uouA 474 1.73e+01 a.46.2.1 -951 c.27.1.1 -6642 d.41.3.1 -9715 1lc5A 364 1.73e+01 c.67.1.1 73827 1ooyA 481 1.77e+01 unknown_sccs -6867 unknown_sccs -6873 1uv7A 110 1.77e+01 unknown_sccs -10256 1uby 367 1.79e+01 1uby a.128.1.1 19435 1o5iA 249 1.80e+01 c.2.1.2 -5833 1o5hA 214 1.81e+01 unknown_sccs -1078 1js1X 324 1.81e+01 c.78.1.1 71834 c.78.1.1 71835 1g8aA 227 1.81e+01 c.66.1.3 -8049 2dri 271 1.83e+01 2dri c.93.1.1 35637 1jcfA 344 1.84e+01 c.55.1.1 62878 c.55.1.1 62879 1heiA 451 1.84e+01 1heiA c.37.1.14 32463 c.37.1.14 32464 1e4iA 447 1.87e+01 1e70M c.1.8.4 59225 1ojaA 520 1.90e+01 c.3.1.2 -6000 d.16.1.5 -9220 1nthA 458 1.92e+01 c.1.25.1 80730 1bco 327 1.92e+01 1bco b.48.1.1 26431 c.55.3.3 33676 3xis 387 1.94e+01 4xis c.1.15.3 29423 1vhuA 211 1.95e+01 c.50.1.2 -7934 1jqnA 883 1.96e+01 c.1.12.3 77159 1kdgA 546 2.00e+01 c.3.1.2 77337 d.16.1.1 77338 1pq4A 291 2.03e+01 c.92.2.2 -8633 1s4nA 348 2.04e+01 unknown_sccs -8262 1gadO 330 2.06e+01 1dssG c.2.1.3 29950 d.81.1.1 39865 1kutA 230 2.06e+01 d.143.1.1 73017 1hzxA 349 2.09e+01 1f88A f.13.1.2 61466 1h8lA 380 2.09e+01 b.3.2.1 65737 c.56.5.1 65738 1gy8A 397 2.13e+01 c.2.1.2 83376 1zin 217 2.13e+01 1zin c.37.1.1 31915 g.41.2.1 45178 1j1lA 290 2.14e+01 unknown_sccs -4877 1dv1A 449 2.19e+01 1bncA b.84.2.1 28234 c.30.1.1 31641 d.142.1.2 41486 1fcdA 401 2.21e+01 1fcdA c.3.1.5 30593 c.3.1.5 30594 d.87.1.1 40218 1howA 373 2.21e+01 1hcl d.144.1.7 41679 1p1mA 406 2.23e+01 b.92.1.4 87696 c.1.9.9 87697 1uayA 242 2.26e+01 c.2.1.2 88390 1mqsA 671 2.27e+01 e.25.1.1 79414 1v1rA 400 2.32e+01 1i1qB 192 2.32e+01 1qdlB c.23.16.1 61544 1qmvA 197 2.33e+01 1qq2A c.47.1.10 33066 1rovA 857 2.33e+01 a.119.1.1 -1656 b.12.1.1 -3034 1l4uA 176 2.33e+01 c.37.1.2 73568 1jb9A 316 2.35e+01 1fnc b.43.4.2 62840 c.25.1.1 62841 1broA 277 2.37e+01 1brt c.69.1.12 34700 1p0iA 529 2.37e+01 c.69.1.1 -8291 1nstA 325 2.38e+01 1nstA c.37.1.5 31951 1qh5A 260 2.40e+01 1qh5A d.157.1.2 42057 1mwvA 714 2.40e+01 a.93.1.3 85161 a.93.1.3 85162 1q8yA 373 2.44e+01 d.144.1.7 -11319 1muwA 386 2.45e+01 c.1.15.3 79495 1iysA 262 2.47e+01 e.3.1.1 -11760 1vom 762 2.53e+01 1lvk b.34.3.1 24577 c.37.1.9 32174 1m32A 366 2.60e+01 c.67.1.3 78508 2gar 212 2.62e+01 2gar c.65.1.1 34161 1m33A 258 2.65e+01 c.69.1.26 78514 1fiy 883 2.66e+01 1fiy c.1.12.3 29307 1qk8A 146 2.69e+01 1ewxA c.47.1.10 33061 1lvk 762 2.69e+01 1lvk b.34.3.1 24576 c.37.1.9 32173 1rliA 184 2.72e+01 unknown_sccs -6438 1qh3A 260 2.73e+01 1qh5A d.157.1.2 42059 1k3xA 262 2.74e+01 a.156.1.2 77242 b.113.1.1 77243 g.39.1.8 77244 1t2aA 375 2.84e+01 c.2.1.2 -5764 1nytA 271 2.85e+01 c.2.1.7 86417 c.58.1.5 86418 1r03A 182 2.86e+01 1iugA 352 2.97e+01 c.67.1.3 -8176 1i19A 561 3.01e+01 1i19A d.58.32.3 61522 d.145.1.1 61523 1rybA 212 3.03e+01 c.56.3.1 -7858 1v02A 565 3.03e+01 1j6pA 418 3.06e+01 b.92.1.4 77089 c.1.9.9 77090 1ry9A 145 3.07e+01 d.198.1.1 -9020 1kid 203 3.07e+01 1derA c.8.5.1 30771 1qcwA 410 3.13e+01 1gox c.1.4.1 28622 4xis 387 3.15e+01 4xis c.1.15.3 29421 1olsA 400 3.16e+01 c.36.1.11 -6959 1k32A 1045 3.18e+01 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1m1nA 491 3.20e+01 c.92.2.3 78417 1mkzA 172 3.22e+01 c.57.1.1 84998 1ubeA 349 3.27e+01 c.37.1.11 88412 d.48.1.1 88413 1i3cA 149 3.28e+01 c.23.1.1 71112 1npyA 271 3.29e+01 c.2.1.7 85995 c.58.1.5 85996 1fjhA 257 3.30e+01 1fjhB c.2.1.2 29870 1f7lA 121 3.35e+01 1f7lA d.150.1.2 59666 1g3qA 237 3.36e+01 1hyqA c.37.1.10 60237 1k3tA 359 3.40e+01 c.2.1.3 72022 d.81.1.1 72023 1g6sA 427 3.45e+01 1eps d.68.2.2 39584 1gg1A 350 3.50e+01 1qr7A c.1.10.4 29187 1dvjA 246 3.51e+01 1dvjA c.1.2.3 28546 1yge 839 3.52e+01 1yge a.119.1.1 19234 b.12.1.1 23634 1obbA 480 3.58e+01 c.2.1.5 86760 d.162.1.2 86761 1dxeA 256 3.59e+01 1dxeA c.1.12.5 29310 1l9hA 349 3.60e+01 f.13.1.2 73720 1jvnA 555 3.62e+01 c.1.2.1 67355 c.23.16.1 67356 1dtdA 303 3.64e+01 1aye c.56.5.1 33823 1viaA 175 3.67e+01 c.37.1.2 -7021 1jnrA 643 3.70e+01 a.7.3.1 66966 c.3.1.4 66967 d.168.1.1 66968 1eljA 381 3.73e+01 4mbp c.94.1.1 35791 1ciy 590 3.80e+01 1ciy b.18.1.3 23720 b.77.2.1 27977 f.1.3.1 43392 1m2eA 135 3.80e+01 c.23.1.5 78478 1jbeA 128 3.85e+01 3chy c.23.1.1 62845 1o8xA 146 3.87e+01 c.47.1.10 86681 1pvtA 238 3.88e+01 c.74.1.1 -8444 1rypE 242 3.91e+01 1rypE d.153.1.4 41936 1mu5A 471 3.93e+01 a.156.1.3 79472 d.14.1.3 79473 d.122.1.2 79474 1mldA 314 3.93e+01 2cmd c.2.1.5 30122 d.162.1.1 42089 1ivyA 452 3.98e+01 1ivyA c.69.1.5 34654 1fnnA 389 4.00e+01 1fnnA a.4.5.11 16129 c.37.1.20 32426