# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jlvA 209 1.02e-26 a.45.1.1 71729 c.47.1.5 71730 1fw1A 216 6.13e-26 a.45.1.1 60051 c.47.1.5 60052 1e6bA 221 9.62e-26 1e6bA a.45.1.1 59294 c.47.1.5 59295 1axdA 209 3.54e-25 1gnwA a.45.1.1 17730 c.47.1.5 33024 1oyjA 231 6.56e-25 a.45.1.1 87597 c.47.1.5 87598 6gsvA 217 1.88e-24 1b8xA a.45.1.1 17633 c.47.1.5 32925 1eemA 241 2.67e-24 1eemA a.45.1.1 17717 c.47.1.5 33011 1gnwA 211 5.54e-24 1gnwA a.45.1.1 17727 c.47.1.5 33021 1a0fA 201 6.17e-24 1a0fA a.45.1.1 17737 c.47.1.5 33031 1n2aA 201 7.81e-24 a.45.1.1 -938 c.47.1.5 -7463 1k0dA 260 2.16e-23 a.45.1.1 67930 c.47.1.5 67931 1b4pA 217 5.36e-23 a.45.1.1 83158 c.47.1.5 83159 1pgtA 210 6.83e-23 1pgtA a.45.1.1 17515 c.47.1.5 32809 1f2eA 201 8.15e-23 1a0fA a.45.1.1 17745 c.47.1.5 33039 1dugA 234 4.44e-22 1b8xA a.45.1.1 17718 c.47.1.5 33012 1k3yA 221 9.77e-22 a.45.1.1 77245 c.47.1.5 77246 1f3aA 222 1.18e-21 1pgtA a.45.1.1 17701 c.47.1.5 32995 2gsq 202 2.52e-21 1pd21 a.45.1.1 17715 c.47.1.5 33009 1iyhA 198 2.84e-20 a.45.1.1 83790 c.47.1.5 83791 1pd21 199 3.70e-20 1pd21 1oktA 211 5.41e-20 a.45.1.1 -942 c.47.1.5 -7467 1m0uA 249 8.87e-20 a.45.1.1 78359 c.47.1.5 78360 1oe8A 211 2.25e-18 a.45.1.1 86905 c.47.1.5 86906 1nhyA 219 1.20e-17 a.45.1.1 80520 c.47.1.5 80521 1k0mA 241 9.91e-17 a.45.1.1 67949 c.47.1.5 67950 1g7oA 215 3.59e-13 1g7oA a.45.1.1 60332 c.47.1.5 60333 1c3cA 429 4.10e-01 1c3cA a.127.1.1 19425 1s3eA 520 4.26e-01 c.3.1.2 -6022 d.16.1.5 -9242 1h75A 81 4.93e-01 1h75A c.47.1.1 60716 1ojaA 520 5.24e-01 c.3.1.2 -6000 d.16.1.5 -9220 1aj8A 371 2.77e+00 1aj8A a.103.1.1 18900 1p4xA 250 3.52e+00 a.4.5.28 87784 a.4.5.28 87785 1mwmA 320 3.79e+00 c.55.1.1 79580 c.55.1.1 79581 1ku1A 230 4.68e+00 a.118.3.1 72996 1mwvA 714 4.77e+00 a.93.1.3 85161 a.93.1.3 85162 2sqcA 631 5.27e+00 2sqcA a.102.4.2 18854 a.102.4.2 18855 1dmuA 299 5.45e+00 1dmuA c.52.1.4 33294 1bza 262 5.66e+00 1btl e.3.1.1 42701 1v3wA 173 6.95e+00 b.81.1.5 -4815 1ab4 477 8.04e+00 1ab4 e.11.1.1 43251 1vhnA 318 8.23e+00 c.1.4.1 -5209 1kutA 230 8.37e+00 d.143.1.1 73017 1hf8A 289 8.59e+00 1hg5A unknown_sccs -399 unknown_sccs -1628 1kte 105 9.68e+00 1kte c.47.1.1 32771 1ako 268 1.03e+01 1ako d.151.1.1 41779 1iysA 262 1.06e+01 e.3.1.1 -11760 1gggA 226 1.08e+01 1lst c.94.1.1 35817 1n1bA 549 1.17e+01 a.102.4.1 79799 a.128.1.3 79800 1hl2A 297 1.31e+01 c.1.10.1 83581 1dkzA 219 1.33e+01 1dkzA unknown_sccs -445 unknown_sccs -3060 1gw5A 621 1.35e+01 a.118.1.10 70629 1n9bA 265 1.40e+01 e.3.1.1 85463 1uolA 219 1.41e+01 b.2.5.2 -2886 1pea 385 1.46e+01 1pea c.93.1.1 35662 1nx8A 273 1.48e+01 b.82.2.8 86374 1qmhA 347 1.51e+01 1qmhA c.47.2.1 33082 d.68.2.1 39568 1adjA 421 1.61e+01 1adjA c.51.1.1 33188 d.104.1.1 40737 1olsA 400 1.69e+01 c.36.1.11 -6959 1mplA 349 1.70e+01 e.3.1.1 79387 1miwA 404 1.79e+01 a.173.1.1 79162 d.218.1.4 79163 3pte 349 1.85e+01 3pte e.3.1.1 42687 1ngvA 534 1.94e+01 c.111.1.2 85698 1umdA 367 1.96e+01 c.36.1.11 -6969 1qm4A 396 2.07e+01 1mxb d.130.1.1 41350 d.130.1.1 41351 d.130.1.1 41352 1hvbA 349 2.08e+01 3pte e.3.1.1 42686 1o1yA 239 2.35e+01 c.23.16.1 86554 1gsa 316 2.37e+01 1gsa c.30.1.3 31718 d.142.1.1 41477 1q5dA 419 2.42e+01 a.104.1.1 -1454 1iqvA 218 2.43e+01 1rss a.75.1.1 62661 1mkmA 249 2.53e+01 a.4.5.33 79242 d.110.2.2 79243 1j0fA 100 2.59e+01 unknown_sccs -7483 1ufkA 254 2.61e+01 unknown_sccs -8103 1pg4A 652 2.61e+01 e.23.1.1 88067 1o4vA 183 2.61e+01 c.23.8.1 86628 1ds1A 324 2.66e+01 1drtA b.82.2.2 28127 1umnA 165 2.68e+01 a.25.1.1 -656 1ji0A 240 2.79e+01 c.37.1.12 71665 1gveA 327 2.86e+01 c.1.7.1 70597 1ermA 263 2.86e+01 1btl e.3.1.1 42690 1lc0A 294 2.96e+01 c.2.1.3 73823 d.81.1.4 73824 1rec 201 2.97e+01 1rec a.39.1.5 17326 1tupA 219 2.98e+01 1tupA b.2.5.2 22434 1jl3A 139 3.01e+01 c.44.1.1 66826 1pqnA 127 3.01e+01 c.47.1.8 -7479 1avk 638 3.13e+01 1a2vA b.30.2.1 24410 d.17.2.1 38047 d.17.2.1 38048 1riqA 465 3.15e+01 unknown_sccs -1295 d.104.1.1 -10769 1ro0A 216 3.20e+01 unknown_sccs -11390 1qoyA 318 3.21e+01 1qoyA h.4.4.1 45788 1f83A 425 3.21e+01 1f82A d.92.1.7 40306 1j9bA 141 3.23e+01 c.47.1.12 66459 1k0eA 453 3.23e+01 d.161.1.1 67938 1lldA 319 3.24e+01 3ldh c.2.1.5 30177 d.162.1.1 42144 1mldA 314 3.28e+01 2cmd c.2.1.5 30122 d.162.1.1 42089 1m2kA 249 3.34e+01 c.31.1.5 84754 1nzeA 149 3.39e+01 unknown_sccs -599 1kay 381 3.58e+01 1ba1 c.55.1.1 33385 c.55.1.1 33386 1gcuA 295 3.62e+01 1gcuA c.2.1.3 30063 d.81.1.4 39978 1nhp 447 3.69e+01 1nhp c.3.1.5 30549 c.3.1.5 30550 d.87.1.1 40196 1hu4A 288 3.80e+01 1hu4A 1n5dA 288 3.82e+01 c.2.1.2 80030 1bv1 159 3.98e+01 1bv1 d.129.3.1 41313