PFRMAT RR
TARGET T0232
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The number of predictions is limited to .5*sequence_length.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 134 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
METHOD This version uses a new error function designed to improve
METHOD the top scores per protein.
MODEL 1
MEDGMNTFDLYYWPVPFRGQLIRGILAHCGCSWDEHDVDAIEGLMDCGAE
KQPVAFMGPPVLIDRERNFAISQMPAIAIYLGERLDILPATVEGRTLSAK
IVNDANDVLDELTLNGGREMWTPEKWQEFVPRLQKWIRIFADTGARNGLS
AASGFMLGTEKIGVADIVTAILWTTVADRFPAIKGIIEDTSPIIWGLSRR
VVATAPLAALNSKSFEEYGNAYCGGEIEKSLRKVAS
16 73 0 8 0.392
21 73 0 8 0.37
17 197 0 8 0.337
16 197 0 8 0.31
24 173 0 8 0.3
22 167 0 8 0.298
10 170 0 8 0.293
21 197 0 8 0.288
22 62 0 8 0.283
29 73 0 8 0.28
16 169 0 8 0.278
21 74 0 8 0.276
92 169 0 8 0.271
22 74 0 8 0.261
166 199 0 8 0.259
51 73 0 8 0.259
48 169 0 8 0.259
17 82 0 8 0.257
5 77 0 8 0.257
76 167 0 8 0.25
24 201 0 8 0.25
21 174 0 8 0.248
112 165 0 8 0.246
73 136 0 8 0.246
35 73 0 8 0.246
73 197 0 8 0.243
140 167 0 8 0.241
55 73 0 8 0.241
96 169 0 8 0.239
73 169 0 8 0.239
28 167 0 8 0.239
173 197 0 8 0.237
22 73 0 8 0.237
59 73 0 8 0.235
19 61 0 8 0.235
18 29 0 8 0.235
76 157 0 8 0.232
10 171 0 8 0.232
17 73 0 8 0.23
79 99 0 8 0.228
72 168 0 8 0.228
22 169 0 8 0.228
22 164 0 8 0.228
25 167 0 8 0.226
26 73 0 8 0.224
162 198 0 8 0.222
76 96 0 8 0.222
29 206 0 8 0.222
19 86 0 8 0.222
138 165 0 8 0.22
38 61 0 8 0.22
19 197 0 8 0.22
12 73 0 8 0.22
162 197 0 8 0.218
153 171 0 8 0.218
106 174 0 8 0.218
25 170 0 8 0.218
23 165 0 8 0.218
13 174 0 8 0.218
71 95 0 8 0.216
28 204 0 8 0.216
25 136 0 8 0.216
22 197 0 8 0.216
19 102 0 8 0.216
18 74 0 8 0.216
171 197 0 8 0.214
164 174 0 8 0.214
114 197 0 8 0.214
75 163 0 8 0.214
12 197 0 8 0.214
144 197 0 8 0.212
141 192 0 8 0.212
89 98 0 8 0.212
87 174 0 8 0.212
78 168 0 8 0.212
73 102 0 8 0.212
59 197 0 8 0.212
17 26 0 8 0.212
168 200 0 8 0.21
157 172 0 8 0.21
156 168 0 8 0.21
79 170 0 8 0.21
74 164 0 8 0.21
28 165 0 8 0.21
24 62 0 8 0.21
23 62 0 8 0.21
21 115 0 8 0.21
21 48 0 8 0.21
134 167 0 8 0.208
32 167 0 8 0.208
18 171 0 8 0.208
162 200 0 8 0.206
78 170 0 8 0.206
74 114 0 8 0.206
72 102 0 8 0.206
61 157 0 8 0.206
26 64 0 8 0.206
22 157 0 8 0.206
21 62 0 8 0.206
19 62 0 8 0.206
12 165 0 8 0.206
11 73 0 8 0.206
167 201 0 8 0.204
157 168 0 8 0.204
22 170 0 8 0.204
22 98 0 8 0.204
22 78 0 8 0.204
17 169 0 8 0.204
17 62 0 8 0.204
12 172 0 8 0.204
11 197 0 8 0.204
168 194 0 8 0.202
140 173 0 8 0.202
140 168 0 8 0.202
120 167 0 8 0.202
33 166 0 8 0.202
21 169 0 8 0.202
15 164 0 8 0.202
END